FC930228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: U183_ARATH (UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2) HSP 1 Score: 392.119 bits (1006), Expect = 1.540e-108 Identity = 184/218 (84.40%), Postives = 196/218 (89.91%), Query Frame = 3 Query: 60 LQSQKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPIGSLYMEEVH 713 L Q+PRRR EGTAMGA V DLRPGVGIGPFS+GMPICEAFA IEQQPNIYDVVHVKY+DE+PLKLD+VISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAVYALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTCRVSIYD S+DKKVGVG L D+A P LP GSLYMEEVH Sbjct: 11 LVMQRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYDEDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVH 228
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: U183_DROME (UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22 Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 3 Query: 117 LDLRPGVGIG----PFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQ----YADCCQDREAELPLEFPDGTTPVTCRVSIYDGS 623 L++ P + +G F LGM +A A I+ Q I V V Y D PL +DI+I+ P G L FDP SQRL+ IE+F++K +++RY L + + FG T PGVYD + ++ L + GLSF FP+ ++ YA L F +G +PV ++S+Y GS Sbjct: 4 LEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTTPLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPEVLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAHGLSS------LVFLNGASPVVSKMSLYAGS 174
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: U183_CAEEL (UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18 Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 3 Query: 150 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFP 512 F LGMPI + A I+Q P + V +KY ++P DI+I G L FD SQ ++LIE+ ++ + + Y ++ + +AT V FG T PG YD + ++Y+ +PGLSF FP Sbjct: 37 FVLGMPINQCIAMIQQHPRMLTKVELKYSKKDPFYQDIIIYIGSTGIRLYFDGLSQLIKLIEVDNLSMITLTYNDTIFSDPNNMATLDRVNEFFGSTHPGSYDDKHNIYVQSWPGLSFCFP 157
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: CP070_RAT (UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17 Identity = 59/194 (30.41%), Postives = 100/194 (51.55%), Query Frame = 3 Query: 150 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----IGSLYMEEV 710 F+LGMP+ +A A +++ I V V Y ++ PL D++++ G L FD ++QRL++IE++D+ +++++Y + T + FG T PGVY+ ++ L + GLSF+F + + A + A L+ P G T R+ IY G+ SL D AP +P +G++Y E V Sbjct: 19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESV 201
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: CP070_HUMAN (UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16 Identity = 59/194 (30.41%), Postives = 99/194 (51.03%), Query Frame = 3 Query: 150 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----IGSLYMEEV 710 F+LGMP+ +A A +++ I V V Y ++ PL D++++ G L FD ++QRL++IE+ D+ +++++Y + T + FG T PGVY+ ++ L + GLSF+F + + A + A L+ P G T R+ IY G+ SL D AP +P +G++Y E V Sbjct: 19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESV 201
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: CP070_MOUSE (UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15 Identity = 57/192 (29.69%), Postives = 98/192 (51.04%), Query Frame = 3 Query: 150 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSA--DKKVGVGSLFDKAIAPSLPIGSLYMEEV 710 F+LGMP+ +A A +++ I V V Y ++ PL D++++ G L FD ++QRL++IE+ ++ +++++Y + T + FG T PGVY+ ++ L + GLSF+F + + A + A L+ P G T R+ IY G++ D K V L S +G++Y E V Sbjct: 19 FTLGMPLAQAVAILQKHCRIIRNVQVLYSEQSPLSHDLILNLTQDGITLLFDAFNQRLKVIEVCELTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSTEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGNSLQDTKAPVMPL-------SCFLGNVYAESV 201 The following BLAST results are available for this feature:
BLAST of FC930228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930228 ID=FC930228; Name=FC930228; organism=Citrus clementina; type=EST; length=718bpback to top |