FC930229

Overview
NameFC930229
Unique NameFC930229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:8..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 79/226 (34.96%), Postives = 101/226 (44.69%), Query Frame = 1
Query:   70 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAVFFD--------YESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTN-----RXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            MATP E SAL  I+++L  E SP+                          + ND   FD        +E+KP+IIDLVTP+P         + F+FD++ +I S+ SN S  F+                       P + +   F                    HYRGVR RPWGK+AAEIRDPTRRG RVWL TF+T            F+LRGSKAI +FPL
Sbjct:    1 MATPNEVSALFLIKKYLLDELSPLP------------------TTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKP---------EIFDFDVKSEIPSE-SNDSFTFQSNPPRVTVQSNRKPPLKIAP---PNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPL 195          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 78/221 (35.29%), Postives = 97/221 (43.89%), Query Frame = 1
Query:   70 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAV----FFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQS---QPSNCS-SEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTNRXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            MATP E SAL FIE+HL  E SP+A                           + +     F +   KP+IIDL TP+      E  +  FEFD    +     +PSN + ++FE                      +   AE    T              HYRGVR+RPWGK+AAEIRDP +RG RVWL TFDT            F+LRGSKAI +FPL
Sbjct:    1 MATPNEVSALWFIEKHLLDEASPVATDPWMKHESSSATESSSDSSSIIFGSSSSSFAPIDFSESVCKPEIIDLDTPRSM----EFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAEN---TKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPL 214          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            HYRGVRRRPWGKYAAEIRDP ++GVRVWL TFDT            F+LRGSKAI +FPL
Sbjct:   71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPL 130          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            HYRGVR+RPWGK+AAEIRDP R+G RVWL TFDT            F+LRGSKAI +FPL
Sbjct:  144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPL 203          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            HYRGVRRRPWGKYAAEIRDP ++G R+WL T+DT            FQLRG KAI +FPL
Sbjct:   87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPL 146          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            HYRGVR+RPWGK+AAEIRDP R+G RVWL TFDT            ++LRGSKAI +FPL
Sbjct:  137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPL 196          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            HYRGVRRRPWGK+AAEIRDP ++G R+WL TF++            F+LRG KA+ +FPL
Sbjct:  106 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPL 165          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            HYRGVRRRPWGK+AAEIRDP ++G R+WL TF++            F+LRG KA+ +FPL
Sbjct:  109 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPL 168          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            HYRGVR+RPWGK+AAEIRDP + G RVWL TF+T            F++RGS+A+ +FPL
Sbjct:  116 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPL 175          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFPL 708
            HYRGVR+RPWGK+AAEIRDP + G RVWL TF+T            F++RGS+A+ +FPL
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206          
The following BLAST results are available for this feature:
BLAST of FC930229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
EF103_ARATH9.860e-2334.96Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF102_ARATH7.066e-2135.29Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF105_ARATH4.740e-1768.33Ethylene-responsive transcription factor ERF105 OS... [more]
ERF5_TOBAC4.012e-1665.00Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF104_ARATH6.844e-1663.33Ethylene-responsive transcription factor ERF104 OS... [more]
ERF5_NICSY8.938e-1663.33Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF107_ARATH3.755e-1456.67Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH3.755e-1456.67Ethylene-responsive transcription factor ERF106 OS... [more]
EF101_ARATH3.755e-1456.67Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH3.755e-1456.67Ethylene-responsive transcription factor 1A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC34005B09EF PostHarvC1 Citrus clementina cDNA clone C34005B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930229 ID=FC930229; Name=FC930229; organism=Citrus clementina; type=EST; length=709bp
GGTACTCAAAACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGA
CACAGCTTGCTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCG
AGTTTATCGAGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTT
AGTTCGAGTTTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTC
TGCATCTTCAGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATG
AATCCAAACCTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACT
TGCTCTGAATTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAAT
CCAATCGCAACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAA
TATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATC
TCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAA
GGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGA
GGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGC
GTACGTGTCTGGCTGGNGACATTTGACACGGCCATTGAAGCAGCTAGGGC
GTACGACCGTGCCGCTTTCCAGCTACGCGGCTCGAAAGCGATCCCTCACT
TTCCTCTTG
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