FC930233

Overview
NameFC930233
Unique NameFC930233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5260 contig Ccv1_Contig5260:208..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930233 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15
Identity = 50/149 (33.56%), Postives = 70/149 (46.98%), Query Frame = 3
Query:   33 PLIVYVHGGGLILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDAV*VLHWIKTTQEHWLIQYADLSS-CFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPILPPSSTDLLW 476
            P+I++ HGG  +  SA++ IY  LC         V+VSV+YR APEHR P AY D    L W+ +  + ++    D  +  F+ GDS GGN+A+H                          FGG +RTESE RL  +  +     D  W
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS--QPFMRSGGDAQARVFLSGDSSGGNIAHH-----VAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYW 255          
BLAST of FC930233 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 52/150 (34.67%), Postives = 70/150 (46.67%), Query Frame = 3
Query:   30 LPLIVYVHGGGLILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDAV*VLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPILPPSSTDLLW 476
            +P+IV+ HGG     SA + IY  LC  +     AV+VSV+YR APE+R P AY D   VL W+ ++   WL    D     F+ GDS GGN+ ++                          FGG +RTESE RL  +  +     D  W
Sbjct:  104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS--WLRSKKDSKVRIFLAGDSSGGNIVHN-----VAVRAVESRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYW 246          
BLAST of FC930233 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.035e-13
Identity = 47/150 (31.33%), Postives = 69/150 (46.00%), Query Frame = 3
Query:   30 LPLIVYVHGGGLILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDAV*VLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPILPPSSTDLLW 476
            +P++++ HGG     SA + IY   C  +      V+VSVDYR +PEHR P AY D    L+W+K+    WL    D +   ++ GDS GGN+A++                          FGG +RT+SE  L  +  +     D  W
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS--RVWLQSGKDSNVYVYLAGDSSGGNIAHN-----VAVRATNEGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYW 248          
BLAST of FC930233 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.706e-13
Identity = 48/150 (32.00%), Postives = 67/150 (44.67%), Query Frame = 3
Query:   30 LPLIVYVHGGGLILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDAV*VLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPILPPSSTDLLW 476
            +P+I++ HGG     SA + IY  LC  +      V+VSV+YR APE+  P AY D    L+W+ +    WL    D     F+ GDS GGN+A++                          FGG +RTESE  L  +  +     D  W
Sbjct:  106 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS--RSWLKSKKDSKVHIFLAGDSSGGNIAHN-----VALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYW 248          
The following BLAST results are available for this feature:
BLAST of FC930233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GID1_ORYSJ1.105e-1533.56Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH1.886e-1534.67Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH1.035e-1331.33Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH6.706e-1332.00Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC34005C01EF PostHarvC1 Citrus clementina cDNA clone C34005C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930233 ID=FC930233; Name=FC930233; organism=Citrus clementina; type=EST; length=478bp
GAAGCGCTTGATTCTTCCCCCCGACCAAGCTTCCCCTTATTGTTTATGTC
CACGGCGGAGGCCTCATTCTCTTAAGCGCAGCCACAAAAATCTACCATGA
TTTATGTTCAGATATTGCAGCCCGAGTCCCTGCTGTGATTGTGTCCGTAG
ATTACAGGCTTGCCCCCGAGCACCGCCTGCCAGCGGCCTACTATGATGCC
GTGTAAGTCTTGCACTGGATCAAAACCACTCAAGAACACTGGTTAATACA
GTACGCTGACTTGTCGTCTTGTTTCATAATGGGCGATAGCGGAGGTGGCA
ACGTAGCTTACCACGCAGCACTGCTAGCAGCGGCGCAAGTTGATGATTTG
TTGCCTTTGAAGATCAGAGGTCTGATATTGCTCAAGCCTTTCTTTGGTGG
GGTCAAAAGGACGGAGTCAGAGTTGAGGTTGGCGAATCAACCGATTTTAC
CACCATCTAGTACTGATTTACTGTGGCA
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