FC930237

Overview
NameFC930237
Unique NameFC930237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:8..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.978e-54
Identity = 71/128 (55.47%), Postives = 83/128 (64.84%), Query Frame = 2
Query:   95 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-----CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            GSA  CG      +CPGG CCS +GWCG T DYC  GCQS C+    G+     CD  D   GDG  G L  II +  F+ LL++RND RCPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAF 147          

HSP 2 Score: 92.8189 bits (229), Expect = 3.978e-54
Identity = 46/75 (61.33%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP--NYPC-RGKYY-GRGPIQLSWNYITYG 641
            K ++  F  QT HETTGGWPDAP G YAWGYC+ +E+      YCDP  NY C  GK Y GRGPIQLSWNY  YG
Sbjct:  141 KREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINC--QPYCDPSSNYQCVAGKQYCGRGPIQLSWNY-NYG 212          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.547e-53
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = 2
Query:   95 GSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            GSA  CG    G VCPGG CCS+FGWCG T DYC  GCQS C+                 G++G++I+R MF D+L++RN+  CP + FYTYDAFI AAKAFP FG +G+ T RKREIAAF
Sbjct:   18 GSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSST---------------GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAF 123          

HSP 2 Score: 89.7373 bits (221), Expect = 2.547e-53
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYITYGAEKA*G 659
            K ++  F AQT HETTGGW  AP G YAWGYC+ RE G+  + YC P+  +PC    KYYGRGPIQ+S+NY    A KA G
Sbjct:  117 KREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIG 196          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 3.918e-51
Identity = 63/122 (51.64%), Postives = 77/122 (63.11%), Query Frame = 2
Query:   98 SAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCE-GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            SA  CG    G +CP G CCS FGWCG T  YC + GCQS        +C P     G  G+L  IIS   F+D+L++RND  CPAR FYTY+AFI AAK+FP FG +G+   RK+E+AAFF
Sbjct:   32 SAEQCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQS--------QCTPGGTPPGPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFF 145          

HSP 2 Score: 95.1301 bits (235), Expect = 3.918e-51
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYITYG 641
            K+++  FF QT HETTGGW  AP G Y+WGYCF +E   A SDYC+P+  +PC    +YYGRGP+QLSWNY  YG
Sbjct:  138 KKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPA-SDYCEPSATWPCASGKRYYGRGPMQLSWNY-NYG 210          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.109e-51
Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = 2
Query:  104 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            G    G +CPGG CCS+FGWCG TTDYC  GCQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF
Sbjct:   31 GRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQCG-----------GPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAF 134          

HSP 2 Score: 88.1965 bits (217), Expect = 5.109e-51
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCR--GKYYGRGPIQLSWNYITYG 641
            K ++  F  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC    +YYGRGPIQ+SWNY  YG
Sbjct:  128 KREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNY-NYG 199          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.110e-51
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 2
Query:   95 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCE--GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            GSA  CG    G +CPGG CCS+FGWCG T DYC +  GCQS C+           G+ GD G L  +I+R+ F+ +L +RND  CPAR FYTYDAFI AAK+FPAF  +G++  RKRE+AAF
Sbjct:   19 GSAEQCGRQAGGALCPGGLCCSQFGWCGNTDDYCKKENGCQSQCS-----------GSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAF 130          

HSP 2 Score: 88.1965 bits (217), Expect = 5.110e-51
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGG--WPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYITYG 641
            K ++  F AQT HETTGG  W  AP G Y WGYC+NRE+  A  DYC  DPNYPC  GK Y+GRGP+QL+WNY  YG
Sbjct:  124 KREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPA--DYCQWDPNYPCAPGKQYFGRGPMQLTWNY-NYG 196          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.680e-51
Identity = 67/122 (54.92%), Postives = 79/122 (64.75%), Query Frame = 2
Query:   98 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            SA  CGS   G  CP G CCS+FGWCG T DYC  G CQS C     G   P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFF
Sbjct:   22 SAEQCGSQAGGARCPSGLCCSKFGWCGNTNDYCGPGNCQSQCP----GGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFF 139          

HSP 2 Score: 88.9669 bits (219), Expect = 8.680e-51
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYITYG 641
            K ++  FFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    KY+GRGPIQ+S NY  YG
Sbjct:  132 KREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNY-NYG 204          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.475e-50
Identity = 66/122 (54.10%), Postives = 78/122 (63.93%), Query Frame = 2
Query:   95 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCC-EGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            GSA  CG    G +CPGG CCS+FGWCG T DYC   GCQS C+           G A   G L  +ISR+ F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF
Sbjct:   20 GSAEQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAF 132          

HSP 2 Score: 90.5077 bits (223), Expect = 1.475e-50
Identity = 49/77 (63.64%), Postives = 55/77 (71.43%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGG--WPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYITYG 641
            K ++  F AQT HETTGG  W  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y+GRGP+QLSWNY  YG
Sbjct:  126 KREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNY-NYG 199          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.923e-50
Identity = 64/117 (54.70%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  104 GNCGSGVVCPGGECCSRFGWCGLTTDYCCE-GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            G    G +CP G CCS FGWCG T  YC + GCQS C     G   P     G  G+L  IISR  F+D+L++RND  CPAR FYTYDAFI AAK+FP FG +G+   RK+EIAAFF
Sbjct:   24 GRQAGGALCPNGLCCSEFGWCGDTEAYCKQPGCQSQC-----GGTPP-----GPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFF 130          

HSP 2 Score: 92.0485 bits (227), Expect = 1.923e-50
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYITYG 641
            K+++  FF QT HETTGGW  AP G Y+WGYCF +E    SS+YC P+  +PC     YYGRGP+QLSWNY  YG
Sbjct:  123 KKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQN-PSSNYCSPSAEWPCASGKSYYGRGPMQLSWNY-NYG 195          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.506e-50
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 2
Query:  104 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            G    G +CPGG CCS+FGWCG TTDYC + CQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF
Sbjct:   30 GRQAGGALCPGGNCCSQFGWCGSTTDYCGKDCQSQCG-----------GPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAF 133          

HSP 2 Score: 88.1965 bits (217), Expect = 2.506e-50
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCR--GKYYGRGPIQLSWNYITYG 641
            K ++  F  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC    +YYGRGPIQ+SWNY  YG
Sbjct:  127 KREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNY-NYG 198          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.229e-49
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = 2
Query:   98 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            SA  CG+   G +CPGG CCS+FGWCG T++YC +GCQS C+           G++G GG L  +IS   F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAF 126          

HSP 2 Score: 90.1225 bits (222), Expect = 1.229e-49
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG--KYYGRGPIQLSWNYITYG 641
            K ++  F  QT HETTGGWP AP G YAWGYCF RE   ++       +PC    +YYGRGPIQ+SWNY  YG
Sbjct:  120 KREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNY-NYG 191          
The following BLAST results are available for this feature:
BLAST of FC930237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_POPTR3.978e-5455.47Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI2.547e-5354.55Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIB_ARATH3.918e-5151.64Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU5.109e-5153.91Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI1_THECC5.110e-5153.66Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_TOBAC8.680e-5154.92Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_GOSHI1.475e-5054.10Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_BRANA1.923e-5054.70Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI5_PHAVU2.506e-5053.04Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_PEA1.229e-4950.83Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC34005C05EF PostHarvC1 Citrus clementina cDNA clone C34005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930237 ID=FC930237; Name=FC930237; organism=Citrus clementina; type=EST; length=730bp
AGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATTG
GGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTCA
GCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTAG
TCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAGGCTGCC
AAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGGG
ACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAAGATGTT
TGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGCT
TCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTT
GGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTT
TTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGT
GGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCTGCGTC
GTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCTCTTGGAACTACATTACTTACGGTGCGGAGAAG
GCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCAGACCTTCTGCTACTGA
TCAGTACTATCATTCAGTCAGCATCTGGTT
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