FC930257

Overview
NameFC930257
Unique NameFC930257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.162e-71
Identity = 134/161 (83.23%), Postives = 153/161 (95.03%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISE 629
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYANNSVR TI+RYKKAC+D+ NP +ITEANT   QQEA+KLRRQIR+IQNLNRHILGE+L +LNFKELKNLE+RLEKGI RVRSKK+EML+AEIE+M+KREI+LQNDNMYLRS+I+E
Sbjct:   28 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITE 188          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.421e-69
Identity = 129/164 (78.66%), Postives = 152/164 (92.68%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYANNSVR TI+RYKKAC+D+ NP S+TEANT   QQEA+KLRRQIR+IQN NRHI+GE+L +LNFKELKNLE RLEKGI RVRSKKNE+L+AEIE+M+KRE++LQ++NMYLR++I+E  R
Sbjct:   28 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGAR 191          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.622e-65
Identity = 126/184 (68.48%), Postives = 150/184 (81.52%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERAXXXXXXXXXXXXGGGHVYE 698
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV+ATI+RYKKAC+DSSN GSI+EAN    QQEA+KLR QI  +QN NR++LGE+L+ L+ ++LKNLE ++EKGI ++RSKKNE+L AEIE+M+KREI L N+N YLR++I+E ERA             G   YE
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYE 212          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.348e-64
Identity = 120/165 (72.73%), Postives = 145/165 (87.88%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS+RGRLYEYANNSV+ATI+RYKKAC+DSSN GS++EAN    QQEA+KLR QI  + N NR+++GEAL+ +  KELKNLE R+EKGI ++RSKKNE+L AEIE+M+KRE+ L N+N YLR++I+E ERA
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERA 193          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.348e-64
Identity = 121/165 (73.33%), Postives = 145/165 (87.88%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV+ATI+RYKKAC+DSSN GSI EAN    QQEA+KLR QI  +QN NR+ LGE+L+ LN ++L+NLE ++EKGI ++R+KKNE+L AEIE+M+KREI L N+N YLR++I+E ER+
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERS 193          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.895e-62
Identity = 117/165 (70.91%), Postives = 142/165 (86.06%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENERA 641
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANNSV+ TI+RYKKAC DS N  S++EAN    QQEA+KLR++I  IQ  NR+++GE+L +L  ++LK LE +LEKGI R+RSKKNE+L AEIE+M+K+EI L N+N YLR++I+ENERA
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERA 193          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.057e-60
Identity = 112/165 (67.88%), Postives = 146/165 (88.48%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLN-RHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV++T++RYKKA +D+SN G++ E N    QQE++KLR+QI  +QN N R I+G++++T++ ++LK +E RLEKGI ++R++KNE+L AE+E+M+KRE++LQNDNMYLRS++ ENER
Sbjct:   13 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENER 177          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.815e-60
Identity = 112/164 (68.29%), Postives = 139/164 (84.76%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN GS+ E N    QQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RL++ + R+RSKKNE+L AEI++M+KRE+ L NDN  LR++I+ENER
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENER 192          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.021e-59
Identity = 113/164 (68.90%), Postives = 139/164 (84.76%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN GS+ E N    QQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RLE+ I R+RSKKNE+L +EI++M+KRE+ L NDN  LR++I+ENER
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER 192          
BLAST of FC930257 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.970e-59
Identity = 108/164 (65.85%), Postives = 143/164 (87.20%), Query Frame = 3
Query:  156 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANT---QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRSRISENER 638
            NTTNRQVTFCKRR+GLLKKAYELSVLCDAEVAL+VFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN  ++ E N    QQEA KL++QI  +QN NR ++G+ ++T+N +ELK LE RL+KG+G++R++KNE+L AEIE+M++RE +LQNDNMYL+S+++E+ER
Sbjct:   55 NTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESER 218          
The following BLAST results are available for this feature:
BLAST of FC930257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AGL5_ARATH1.162e-7183.23Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH1.421e-6978.66Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_TOBAC3.622e-6568.48Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC2.348e-6472.73Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PETHY2.348e-6473.33Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_PANGI4.895e-6270.91Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
MADS3_ORYSJ2.057e-6067.88MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_BRANA7.815e-6068.29Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH1.021e-5968.90Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MAD58_ORYSJ2.970e-5965.85MADS-box transcription factor 58 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34005E01EF PostHarvC1 Citrus clementina cDNA clone C34005E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930257 ID=FC930257; Name=FC930257; organism=Citrus clementina; type=EST; length=719bp
AGATAGATATATTTTTTTCTTCTTTCTTTTTTGTCTTTTTCAGGTGTAGC
TCAAGCAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGCAAGAAGCCACAAAACT
ACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACATTCTGGGTG
AGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTTGAGGCAAGA
CTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGAAATGTTATT
AGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTCAAAATGATA
ACATGTACCTGAGAAGCAGGATATCTGAAAATGAGAGAGCACAACAAGAA
CGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGTGTACGAGCC
CGCGGCTTCACAGCCCTAT
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