FC930260

Overview
NameFC930260
Unique NameFC930260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:148..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.275e-38
Identity = 103/223 (46.19%), Postives = 125/223 (56.05%), Query Frame = 2
Query:    2 GGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET-PAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFN 616
            GGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP+E   A + K SVKAN QK V K   +P  P+L QN N
Sbjct:    3 GGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPALVQNSN 218          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.277e-38
Identity = 103/250 (41.20%), Postives = 131/250 (52.40%), Query Frame = 2
Query:    2 GGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSVKANS-QKSV--PKACLSPVQPSLNQNFNYLNNSXSGLLQHVSIL 664
            GGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+E   +  +  + S K N+ QKSV  P   ++ VQ   + +  Y NNS       +S +
Sbjct:    3 GGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFM 243          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.938e-28
Identity = 85/221 (38.46%), Postives = 111/221 (50.23%), Query Frame = 2
Query:    2 GGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNS 631
            GGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP E P  A K    + + K+ PK+ +   +P++   FN L N+
Sbjct:    3 GGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVEQ-KPTVKPAFNNLANA 215          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 76/198 (38.38%), Postives = 89/198 (44.95%), Query Frame = 2
Query:    2 GGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD-----ETPAAAPKSSVKANSQKSVPKACL 580
            GGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD           P SS ++  Q    K C+
Sbjct:    3 GGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCV 165          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 2
Query:  302 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 508
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 49/116 (42.24%), Postives = 67/116 (57.76%), Query Frame = 2
Query:  314 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA-----AAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSXSGLL 646
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+E+       A     V+ N +  +  A +S    S   +F +  N+   LL
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTLL 133          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  242 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DETPAAAPKSSVKANSQKSV 565
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP         +P AA     KA++  SV
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASV 219          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  272 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSV-----------KANSQKSVPKACLSPVQPSLNQN 610
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+NFP+      P S+               S+ S     L P++P+ NQ+
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQS 287          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  236 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 529
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP++     P
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPP 141          
BLAST of FC930260 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  293 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSP 586
            +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+        +++ +++ + V ++  SP
Sbjct:   25 DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTI-SHAPRGVSESMNSP 121          
The following BLAST results are available for this feature:
BLAST of FC930260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RA212_ARATH3.275e-3846.19Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH4.277e-3841.20Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF1_ORYSJ8.938e-2838.46Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH1.427e-2538.38Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH4.446e-1962.32Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH2.207e-1842.24Ethylene-responsive transcription factor ERF073 OS... [more]
EF109_ARATH3.186e-1743.10Ethylene-responsive transcription factor ERF109 OS... [more]
ABR1_ARATH9.271e-1738.71Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF110_ARATH1.211e-1642.86Ethylene-responsive transcription factor ERF110 OS... [more]
EF113_ARATH4.601e-1639.80Ethylene-responsive transcription factor ERF113 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34005E04EF PostHarvC1 Citrus clementina cDNA clone C34005E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930260 ID=FC930260; Name=FC930260; organism=Citrus clementina; type=EST; length=664bp
TGGAGGTGCTATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGC
CAAAGAAGCTGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCC
AACAAGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTT
CCAAGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGG
ACGTTGATGCCGACTTGATGATGGCTGATATTAAGCCTTTCACTTTCTCA
GCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGC
TAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGC
AGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGG
GTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGC
TTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTAACT
TTCCAGATGAAACTCCTGCTGCTGCTCCAAAGAGCTCAGTGAAGGCAAAC
TCTCAGAAATCCGTTCCCAAAGCTTGCCTAAGCCCCGTGCAGCCAAGTTT
GAACCAGAACTTCAATTACTTGAACAACTCCNGATCAGGATTACTACAAC
ATGTGAGTATTCTG
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