FC930279

Overview
NameFC930279
Unique NameFC930279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_SCHPO (DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe GN=rpa1 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.545e-53
Identity = 103/204 (50.49%), Postives = 144/204 (70.59%), Query Frame = 3
Query:    3 PYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQ-PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605
            P FA +LTYPE VT +N  ++R+++ING    PGA+H  ++  T+   +P   + R ++  +L T +  ++  P   S      K VYRH+++GD++++NRQPTLHKPS+MAH  R+L GEKT+RMHYANC++YNADFDGDEMN+HFPQ   +R+EA  I N ++QY+ P++GDPLR LIQDH+V    LT KDTF  RDE+ Q
Sbjct:  507 PVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQ 710          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_DROME (DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster GN=RpI1 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.186e-50
Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 3
Query:    9 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605
            FA +L+YP  VT WNV +LR  ++NG ++HPGA +  DK   +T     N   R S+ + L               N  +G K+V+RH+ +GDV+L+NRQP+LHKPSIM H  R+L GEKT R+HY+NC  YNADFDGDEMN H+PQ EV+RAEAYN+VN  + Y+ P +G PL  LIQDH++S   L+ +  F NR+++ Q
Sbjct:  444 FAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLL-------------LSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQ 632          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_YEAST (DNA-directed RNA polymerase I subunit RPA1 OS=Saccharomyces cerevisiae GN=RPA1 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.155e-49
Identity = 98/203 (48.28%), Postives = 138/203 (67.98%), Query Frame = 3
Query:    3 PYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605
            P FA++LTYPE VT +N+ +LR ++ING +  PGAT   ++  ++   +  + + R ++  +L T       P  +       K VYRH+++ DVVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADFDGDEMN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++ Q
Sbjct:  499 PVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLT-------PSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQ 694          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_HUMAN (DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 95/201 (47.26%), Postives = 130/201 (64.68%), Query Frame = 3
Query:    9 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605
            FA +LTYP+ VTPWNV +LR ++ING  +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+ + +
Sbjct:  462 FATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 655          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_RAT (DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus GN=Polr1a PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.277e-48
Identity = 95/201 (47.26%), Postives = 131/201 (65.17%), Query Frame = 3
Query:    9 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605
            FA +LTYP+ VTPWNV +LR ++ING  +HPGA+  +  D   T     +   R ++ ++L T    I +P          K+V RH+++GD++L+NRQPTLH+PSI AH   +L  EK LR+HYANC  YNADFDGDEMN HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +
Sbjct:  469 FATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQG-------AKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_MOUSE (DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.277e-48
Identity = 95/201 (47.26%), Postives = 131/201 (65.17%), Query Frame = 3
Query:    9 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605
            FA +LTYP+ VTPWNV +LR ++ING  +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +
Sbjct:  469 FATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_DICDI (DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium discoideum GN=polr1a PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.543e-46
Identity = 101/201 (50.25%), Postives = 128/201 (63.68%), Query Frame = 3
Query:    6 YFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL-KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 599
            YFA  LT+P+ VT +N  +L  ++ING E +PGA    D+   +      +++ RI++ + L TS     +           K VYRHL  GD VL NRQPTLHKP IM H V+VL K EKTLRMHY+NCSTYNADFDGDEMN+HFPQ  ++ AE   I   N QY+ P NG PLR LIQDHI++  LLTK+DT   + +F
Sbjct:  466 YFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHAPRG--------VNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADF 658          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPC1_SCHPO (DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe GN=rpc1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36
Identity = 88/197 (44.67%), Postives = 118/197 (59.90%), Query Frame = 3
Query:    3 PY-FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 590
            PY  A  LT+PERVT  N   L+D I NG ++HPGA + +D+ S        K  +  G +            + +D+   G +V RHL D DVVL NRQP+LHK SIMAH+V+V +  +TLR +   C  YNADFDGDEMN+H PQ E ++ EA  ++   N  V P NG+P+ +  QD I +A LL+ KDTFL+R
Sbjct:  377 PYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRESGF------KRFLRFGNR-----------NRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKV-RPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDR 555          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_TRYBB (DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei brucei GN=TRP11 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 84/207 (40.58%), Postives = 121/207 (58.45%), Query Frame = 3
Query:   12 ALRLTYPERVT---PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG------AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605
            A  L++PE+VT   P  +  L+  ++NG   +PGATH       +R    +   + +     T R       A+ Q G          +VYRH+ +GD V+ NRQPTLHKPS+M + V+VL G KT+R HY N +++NADFDGDEMNVH PQ   +RAE   +++AN  Y+ P++G P+R LIQDH+ +  L+T +D F +   F Q
Sbjct:  470 ARALSFPEQVTCFAPARMNLLKHCVVNGPRKYPGATHI-----ELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTL-------IVYRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHVPQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQ 664          
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPC1_HUMAN (DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 85/195 (43.59%), Postives = 112/195 (57.44%), Query Frame = 3
Query:   21 LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605
            LT+PE+V   N+  LR  + NG E+HPGA     + + M+       R  + ++L                   G +V RHL DGDVVL NRQP+LHK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++      V P NG+PL + IQD +  A LLT KDTF +R + CQ
Sbjct:  390 LTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ 566          
The following BLAST results are available for this feature:
BLAST of FC930279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPA1_SCHPO6.545e-5350.49DNA-directed RNA polymerase I subunit rpa1 OS=Schi... [more]
RPA1_DROME5.186e-5048.51DNA-directed RNA polymerase I subunit RPA1 OS=Dros... [more]
RPA1_YEAST1.155e-4948.28DNA-directed RNA polymerase I subunit RPA1 OS=Sacc... [more]
RPA1_HUMAN9.781e-4947.26DNA-directed RNA polymerase I subunit RPA1 OS=Homo... [more]
RPA1_RAT1.277e-4847.26DNA-directed RNA polymerase I subunit RPA1 OS=Ratt... [more]
RPA1_MOUSE1.277e-4847.26DNA-directed RNA polymerase I subunit RPA1 OS=Mus ... [more]
RPA1_DICDI4.543e-4650.25DNA-directed RNA polymerase I subunit rpa1 OS=Dict... [more]
RPC1_SCHPO3.264e-3644.67DNA-directed RNA polymerase III subunit rpc1 OS=Sc... [more]
RPA1_TRYBB7.270e-3640.58DNA-directed RNA polymerase I subunit RPA1 OS=Tryp... [more]
RPC1_HUMAN3.608e-3543.59DNA-directed RNA polymerase III subunit RPC1 OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionC34005G03EF PostHarvC1 Citrus clementina cDNA clone C34005G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930279 ID=FC930279; Name=FC930279; organism=Citrus clementina; type=EST; length=688bp
CTCCCTATTTTGCACTAAGGCTCACCTATCCTGAGAGAGTTACTCCTTGG
AATGTCGTAAAGTTAAGGGATTCGATCATTAATGGTGCTGAAATTCATCC
CGGAGCTACGCACTATCTTGATAAGTTGTCCACTATGAGACTGCCGCCAA
ACAAAAAAATGCGAATTTCCATAGGAAGAAAACTAGATACATCAAGAGGA
GCAATTGTGCAGCCTGGAAAGGATTCTGATAATGAATTTGAAGGCAAGAT
GGTGTATCGGCACCTACAGGATGGAGATGTTGTGCTTGTCAATCGGCAGC
CTACGCTTCACAAACCGAGCATAATGGCGCATGTAGTTCGTGTGCTCAAG
GGGGAGAAGACACTTCGAATGCACTATGCCAATTGCAGCACATATAATGC
TGATTTTGATGGTGATGAAATGAATGTTCACTTCCCGCAAGATGAAGTTT
CTCGCGCTGAAGCTTACAATATTGTTAATGCAAATAATCAGTATGTCAGA
CCTTCCAATGGTGATCCGCTTAGATCATTAATCCAGGATCATATTGTCAG
TGCAGCACTTCTGACAAAAAAGGATACTTTCTTAAACCGTGACGAGTTCT
GTCAGCTTCTATATAGTTCTGGTGTTTCCAGTAGTGGGCTAGGTTCTTTC
ACTGGCAAGCCAGGCCAGAGAGTATTAATTTCAGATCA
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