FC930279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_SCHPO (DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe GN=rpa1 PE=1 SV=2) HSP 1 Score: 207.223 bits (526), Expect = 6.545e-53 Identity = 103/204 (50.49%), Postives = 144/204 (70.59%), Query Frame = 3 Query: 3 PYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQ-PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605 P FA +LTYPE VT +N ++R+++ING PGA+H ++ T+ +P + R ++ +L T + ++ P S K VYRH+++GD++++NRQPTLHKPS+MAH R+L GEKT+RMHYANC++YNADFDGDEMN+HFPQ +R+EA I N ++QY+ P++GDPLR LIQDH+V LT KDTF RDE+ Q Sbjct: 507 PVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQ 710
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_DROME (DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster GN=RpI1 PE=1 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 5.186e-50 Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 3 Query: 9 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605 FA +L+YP VT WNV +LR ++NG ++HPGA + DK +T N R S+ + L N +G K+V+RH+ +GDV+L+NRQP+LHKPSIM H R+L GEKT R+HY+NC YNADFDGDEMN H+PQ EV+RAEAYN+VN + Y+ P +G PL LIQDH++S L+ + F NR+++ Q Sbjct: 444 FAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLL-------------LSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQ 632
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_YEAST (DNA-directed RNA polymerase I subunit RPA1 OS=Saccharomyces cerevisiae GN=RPA1 PE=1 SV=2) HSP 1 Score: 196.438 bits (498), Expect = 1.155e-49 Identity = 98/203 (48.28%), Postives = 138/203 (67.98%), Query Frame = 3 Query: 3 PYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605 P FA++LTYPE VT +N+ +LR ++ING + PGAT ++ ++ + + + R ++ +L T P + K VYRH+++ DVVL+NRQPTLHK S+M H VRVL EKTLR+HYAN YNADFDGDEMN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI + LT KD+F R+++ Q Sbjct: 499 PVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLT-------PSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQ 694
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_HUMAN (DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A PE=1 SV=2) HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49 Identity = 95/201 (47.26%), Postives = 130/201 (64.68%), Query Frame = 3 Query: 9 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605 FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T + R ++ ++L T P + K+V RH+++GD++L+NRQPTLH+PSI AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P +G PL LIQDH+VS A +T + F R+ + + Sbjct: 462 FATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 655
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_RAT (DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus GN=Polr1a PE=1 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.277e-48 Identity = 95/201 (47.26%), Postives = 131/201 (65.17%), Query Frame = 3 Query: 9 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605 FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T + R ++ ++L T I +P K+V RH+++GD++L+NRQPTLH+PSI AH +L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P +G PL LIQDH+VS A +T + F R+++ + Sbjct: 469 FATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQG-------AKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_MOUSE (DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a PE=1 SV=2) HSP 1 Score: 192.971 bits (489), Expect = 1.277e-48 Identity = 95/201 (47.26%), Postives = 131/201 (65.17%), Query Frame = 3 Query: 9 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605 FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T + R ++ ++L T P + K+V RH+++GD++L+NRQPTLH+PSI AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P +G PL LIQDH+VS A +T + F R+++ + Sbjct: 469 FATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_DICDI (DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium discoideum GN=polr1a PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 4.543e-46 Identity = 101/201 (50.25%), Postives = 128/201 (63.68%), Query Frame = 3 Query: 6 YFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL-KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 599 YFA LT+P+ VT +N +L ++ING E +PGA D+ + +++ RI++ + L TS + K VYRHL GD VL NRQPTLHKP IM H V+VL K EKTLRMHY+NCSTYNADFDGDEMN+HFPQ ++ AE I N QY+ P NG PLR LIQDHI++ LLTK+DT + +F Sbjct: 466 YFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHAPRG--------VNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADF 658
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPC1_SCHPO (DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe GN=rpc1 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36 Identity = 88/197 (44.67%), Postives = 118/197 (59.90%), Query Frame = 3 Query: 3 PY-FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 590 PY A LT+PERVT N L+D I NG ++HPGA + +D+ S K + G + + +D+ G +V RHL D DVVL NRQP+LHK SIMAH+V+V + +TLR + C YNADFDGDEMN+H PQ E ++ EA ++ N V P NG+P+ + QD I +A LL+ KDTFL+R Sbjct: 377 PYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRESGF------KRFLRFGNR-----------NRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKV-RPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDR 555
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPA1_TRYBB (DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei brucei GN=TRP11 PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36 Identity = 84/207 (40.58%), Postives = 121/207 (58.45%), Query Frame = 3 Query: 12 ALRLTYPERVT---PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG------AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605 A L++PE+VT P + L+ ++NG +PGATH +R + + + T R A+ Q G +VYRH+ +GD V+ NRQPTLHKPS+M + V+VL G KT+R HY N +++NADFDGDEMNVH PQ +RAE +++AN Y+ P++G P+R LIQDH+ + L+T +D F + F Q Sbjct: 470 ARALSFPEQVTCFAPARMNLLKHCVVNGPRKYPGATHI-----ELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTL-------IVYRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHVPQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQ 664
BLAST of FC930279 vs. ExPASy Swiss-Prot
Match: RPC1_HUMAN (DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35 Identity = 85/195 (43.59%), Postives = 112/195 (57.44%), Query Frame = 3 Query: 21 LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 605 LT+PE+V N+ LR + NG E+HPGA + + M+ R + ++L G +V RHL DGDVVL NRQP+LHK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++ V P NG+PL + IQD + A LLT KDTF +R + CQ Sbjct: 390 LTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ 566 The following BLAST results are available for this feature:
BLAST of FC930279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930279 ID=FC930279; Name=FC930279; organism=Citrus clementina; type=EST; length=688bpback to top |