FC930294

Overview
NameFC930294
Unique NameFC930294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15131 contig Ccv1_Contig15131:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 52/150 (34.67%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  240 VVAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + A+ +H + I +L+ K+ K R+C+G+S +SQ L A+    R   L+ +++  Y+  T      L  T   +Y+M FK R++YM + D F +  +++P A+L+ LI+   H      + W F +YLEAV++LPQL ++Q+T   E  TAH
Sbjct:    6 ISADMSHLLAIIILLLKIWKSRSCSGISARSQILFALVFTARYLDLFSTYISLYN--TTMKITFLAATYATVYLMFFKFRSTYMRESDTFRVELLIVPAAILALLIN---HDFAPFELLWTFSIYLEAVAILPQLFLLQSTGSAEVITAH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_CAEEL (ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 54/148 (36.49%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  246 AEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            A+ AHAI I VL+ K+ K R+C G+S +SQ L A+    R   L+ +F   Y+  T      LV +   +Y+M  K +A+Y  + D+F I +++IP  +L+ LI+   H  +   + W F +YLEAV+++PQL ++  T   E  TAH
Sbjct:    8 ADVAHAIAIVVLLLKIWKSRSCEGISGRSQLLFALVFVTRYLDLFTNFFSFYN--TAMKIFYLVASFGTVYLMWAKFKATYDRNNDSFRIEFLVIPSMILALLIN---HEFIFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 49/148 (33.11%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  240 VVAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIH-TLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + A+ AHA+ I +L+ K+ K R+C G+S +SQ L A+    R    F   Y ++ T+     L  ++  +Y+M  K +A+Y  + D F I +++IP  +L+ +I+   H  +   + W F +YLEAV+++PQL ++  T   E  TAH
Sbjct:    6 ITADLAHAVAIVILLLKIWKSRSCEGISGRSQILFAVTFFTRYLDLFTSFYSLYNTVMKVLFLAGSIGTVYLMWVKFKATYDRNNDTFRIEFLVIPSIILALIIN---HEFMFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 52/147 (35.37%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  249 EAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + +H   I +L+ K+ K R+CAG+S KSQ L A+    R   L+ ++V  Y+  ++     L T+   +Y+M  K +A+Y  + D+F I ++L+PCA+LS +I+   H   V  + W F +YLE+V++LPQL ++  T   E  T+H
Sbjct:    9 DLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLDLFTTYVSLYN--SVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLVPCALLSLVIN---HEFTVMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ER21B_XENLA (ER lumen protein retaining receptor 1-B OS=Xenopus laevis GN=kdelr1-B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  243 VAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHT-LPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + + +H   I +L+ K+ K R+CAG+S KSQ L AI    R   L+ +F+  Y+    +   A+   T+W+IY    K +A+Y  + D F + ++++P A+LSFL++   H      I W F +YLE+V++LPQL ++  T   E  T+H
Sbjct:    7 LGDISHLSAIIILLLKIWKSRSCAGISGKSQLLFAIVFTTRYLDLFTNFISFYNTSMKVVYVASSYATVWMIYS---KFKATYDGNHDTFRVEFLIVPTAILSFLVN---HDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD21_XENTR (ER lumen protein retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 51/150 (34.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  243 VAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHT-LPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + + +H   I +L+ K+ K R+CAG+S KSQ L AI    R   L+ +F+  Y+    +   A+   T+W+IY    K +A+Y  + D F + ++++P A+L+FL++   H      I W F +YLE+V++LPQL ++  T   E  T+H
Sbjct:    7 LGDISHLSAILILLLKIWKSRSCAGISGKSQLLFAIVFTTRYLDLFTNFISLYNTSMKMVYVASSYATIWMIYS---KFKATYDGNHDTFRVEFLIVPTAILAFLVN---HDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 51/150 (34.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  243 VAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDI-HTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + + +H + I +L+ K+ K R+CAG+S KSQ L A+    R   L+ +++  Y+    +   A   TT+W+IY    K +A+Y  + D F + ++++P AVL+FL++   H      I W F +YLE+V++LPQL ++  T   E  T+H
Sbjct:    7 LGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYS---KFKATYDGNHDTFRVEFLVVPTAVLAFLVN---HDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD21_BOVIN (ER lumen protein retaining receptor 1 OS=Bos taurus GN=KDELR1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 51/150 (34.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  243 VAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDI-HTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + + +H + I +L+ K+ K R+CAG+S KSQ L A+    R   L+ +++  Y+    +   A   TT+W+IY    K +A+Y  + D F + +++IP A+L+FL++   H      I W F +YLE+V++LPQL ++  T   E  T+H
Sbjct:    7 LGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYS---KFKATYDGNHDTFRVEFLVIPTAILAFLVN---HDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 50/150 (33.33%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  243 VAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDI-HTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + + +H + I +L+ K+ K R+CAG+S KSQ L A+    R   L+ +++  Y+    +   A   TT+W+IY    K +A+Y  + D F + ++++P A+L+FL++   H      I W F +YLE+V++LPQL ++  T   E  T+H
Sbjct:    7 LGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYS---KFKATYDGNHDTFRVEFLVVPTAILAFLVN---HDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSH 150          
BLAST of FC930294 vs. ExPASy Swiss-Prot
Match: ERD21_HUMAN (ER lumen protein retaining receptor 1 OS=Homo sapiens GN=KDELR1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 50/150 (33.33%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  243 VAEAAHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDI-HTLPDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAH 680
            + + +H + I +L+ K+ K R+CAG+S KSQ L A+    R   L+ +++  Y+    +   A   TT+W+IY    K +A+Y  + D F + ++++P A+L+FL++   H      I W F +YLE+V++LPQL ++  T   E  T+H
Sbjct:    7 LGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWLIYS---KFKATYDGNHDTFRVEFLVVPTAILAFLVN---HDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSH 150          
The following BLAST results are available for this feature:
BLAST of FC930294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERD22_CAEEL3.222e-2034.67Putative ER lumen protein retaining receptor C28H8... [more]
ERD2_CAEEL7.935e-1936.49ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_CAEBR7.935e-1933.11ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_DROME1.036e-1835.37ER lumen protein retaining receptor OS=Drosophila ... [more]
ER21B_XENLA1.497e-1734.67ER lumen protein retaining receptor 1-B OS=Xenopus... [more]
ERD21_XENTR1.955e-1734.00ER lumen protein retaining receptor 1 OS=Xenopus t... [more]
ERD21_RAT2.553e-1734.00ER lumen protein retaining receptor 1 OS=Rattus no... [more]
ERD21_BOVIN2.553e-1734.00ER lumen protein retaining receptor 1 OS=Bos tauru... [more]
ERD21_MOUSE3.334e-1733.33ER lumen protein retaining receptor 1 OS=Mus muscu... [more]
ERD21_HUMAN3.334e-1733.33ER lumen protein retaining receptor 1 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC34005H08EF PostHarvC1 Citrus clementina cDNA clone C34005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930294 ID=FC930294; Name=FC930294; organism=Citrus clementina; type=EST; length=681bp
GATTAAGATTATTTTCTTCTCCTATTATCTTTCCCTTAAAAACCTCCAAC
GAAACTGTAGTGTGTCCACTAGGAGTAACAAATAATAATCAAATGAAGGG
TTATAAGACGCCGATCCACGCGGCGGCGACGTGGGTTCGCCGGCAGCCTC
CGAAGATTAAGATATTTTTGGCGGTAATCACGGCCTTAGCAGCTTTAGTT
TTTCTAAGAATGGTGGTCGAAGATCACGACAGCCTTTTTGTTGTTGCCGA
GGCCGCTCACGCTATTGGAATCTCCGTTCTCATTTACAAGCTCACTAAGG
AGAGAACTTGTGCTGGATTGTCACTTAAATCTCAGGAACTAACGGCCATC
TTTTTAGCTGTTAGGCTCTATTGCAGTTTTGTAATGGAATATGATATACA
TACGCTACCTGATTCAGCTACATTGGTGACAACCCTTTGGGTTATTTATA
TGATGCGTTTTAAATTGAGGGCCAGTTACATGGATGATAAAGACAACTTT
GCTATTTACTATGTTTTGATACCTTGTGCTGTTCTATCTTTTCTCATTCA
TCCATCAACCCATCATCATTTAGTTAATCGGATTTCTTGGGCTTTCTGTG
TCTATCTTGAAGCCGTTTCAGTCTTACCCCAGCTACGAGTCATGCAGAAC
ACAAAGATTGTTGAACCATTCACGGCACATT
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