FC930298

Overview
NameFC930298
Unique NameFC930298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:12..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.004e-66
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 2
Query:   80 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 475
            MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL
Sbjct:    1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132          

HSP 2 Score: 121.709 bits (304), Expect = 3.459e-27
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 3
Query:  408 AKTPTFRLLLSNSLLAPAVARGCG-QLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            +K P  ++ +    ++P      G QLFSAMVVRKPAHIFLDELGIDYDEQD+YVVIKHAALFTSTIMSKLLARP  +LFNAVAAEDLI
Sbjct:  110 SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.857e-39
Identity = 80/126 (63.49%), Postives = 95/126 (75.40%), Query Frame = 2
Query:  146 SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLWTALLCHGCAQTSPHL 523
            SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM DMITYADTD    GAGS+GL C YELSKNP++Q+AIIEQSVSPGGGAWL   L      +   HL
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVVRKPAHL 144          

HSP 2 Score: 117.472 bits (293), Expect = 6.524e-26
Identity = 61/89 (68.54%), Postives = 72/89 (80.90%), Query Frame = 3
Query:  408 AKTPTFRLLLSNSLLAPAVARGCG-QLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            +K P+ ++ +    ++P      G QLFS MVVRKPAH+FLDELGI+YDEQD+YVVIKHAALFTSTIMSKLLARP  +LFNAVAAEDLI
Sbjct:  106 SKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 194          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.395e-38
Identity = 89/149 (59.73%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   80 MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLWTALLCHGCAQTSPHL 523
            MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN+Q+AIIEQSVSPGGGAWL   L      +   HL
Sbjct:    1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHL 141          

HSP 2 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 3
Query:  408 AKTPTFRLLLSNSLLAPAVARGCG-QLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            +K P  ++ +    ++P      G QLFSAM+VRKPAH+FLDE+G+ YDEQD+YVV+KHAALFTSTIMSKLLARP  +LFNAVAAEDLI
Sbjct:  103 SKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 191          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.539e-37
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  266 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWL 475
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L+K  P+++IAI+E SVSPGGGAWL
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWL 118          

HSP 2 Score: 87.8113 bits (216), Expect = 3.539e-37
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = 3
Query:  477 GQLFSAMVVRKPAHIFLDELGIDYDEQ--DSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            GQLFSAMV+R+PA +FL+ELG+ Y+E    +YVV+KHA+LFTST+MSK+L+ P  +LFNA A EDLI
Sbjct:  120 GQLFSAMVMRRPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVLSFPNVKLFNATAVEDLI 186          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.262e-33
Identity = 80/146 (54.79%), Postives = 95/146 (65.07%), Query Frame = 2
Query:  119 SSTTNKLFDSSFHGAPMSPSLLRLQPIK----------SSRPNNLSISASAS-PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLWTALLCHGCAQTSPHL 523
            ++  + L  SSF G+ + P+  R  P             + P   S+S S+S PPYDL +F+F PIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSK+P + IAI+EQSVSPGGGAWL   L      +   HL
Sbjct:    3 TAAASSLLKSSFAGSRL-PAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHL 147          

HSP 2 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 3
Query:  477 GQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            GQLFSAMVVRKPAH+FLDELG+ YDE + YVVIKHAALFTST+MS LLARP  +LFNAVA EDLI
Sbjct:  133 GQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLARPNVKLFNAVAVEDLI 197          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.239e-32
Identity = 79/144 (54.86%), Postives = 93/144 (64.58%), Query Frame = 2
Query:  119 SSTTNKLFDSSFHGAPMSPSLLRLQ---------PIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLWTALLCHGCAQTSPHL 523
            ++  + L  SSF G+ + PS  R           P     P   SIS S +PPYDL +F+F PIKESIVSREMTRRYMTDMIT+ADTD    GAGSAGLSCAYELSK+P + +AI+EQSVSPGGGAWL   L      +   HL
Sbjct:    3 TTAASSLLKSSFAGSRL-PSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMVVRRPAHL 144          

HSP 2 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 3
Query:  408 AKTPTFRLLLSNSLLAPAVARGCG-QLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            +K PT  + +    ++P      G QLFSAMVVR+PAH+FLDELG+ YDE + YVV+KHAALFTST+MS+LLARP  +LFNAVA EDLI
Sbjct:  106 SKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLARPNVKLFNAVAVEDLI 194          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 3
Query:  411 KTPTFRLLLSNSLLAPAVARGCG-QLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            + P  ++ +  + +AP      G QLFSAMVVRKPA +FL+E+G+ Y+++  YVV+KHAALFTST+M++ LA P  +LFNA A EDLI
Sbjct:   98 RRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTLALPNVKLFNATAVEDLI 185          

HSP 2 Score: 90.1225 bits (222), Expect = 1.126e-17
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 2
Query:  233 ASASPPYDLN-TFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWL 475
            + A P Y L+ +F F PI+ES VSR MTRRY +D+  YA++D    GAGSAGL+ AY + ++ P+++IAIIE SV+PGGGAWL
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWL 119          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 3
Query:  417 PTFRLLLSNSLLAPAVARGC---GQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            P  ++ +  S +AP    GC   GQL SAMV RKPA  FLD++G+ Y+++ ++VV+KHAALFTST++SK+LA P  ++FNA A EDLI
Sbjct:  104 PDLKITILESNVAPG--GGCWLGGQLMSAMVCRKPADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFNATACEDLI 189          

HSP 2 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  188 LQPIKSSRPNNLSISASA---SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLWTALL 490
            + P+KS + +N +++  A    P  +L   KF PIKE  V R M RRY  DM   A +D    GAGSAGLSCAY L +  P+++I I+E +V+PGGG WL   L+
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPGGGCWLGGQLM 128          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  411 KTPTFRLLLSNSLLAPAVARGCG-QLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            K P  ++ +  + ++P      G QLFSAMV+RKPA  FL E+G+ Y+++ +YVV+KHAALFTSTIMSK+L  P  +LFNA   EDLI
Sbjct:   97 KRPDLKIAIIEASVSPGGGAWLGGQLFSAMVMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQLPNCKLFNATCVEDLI 184          

HSP 2 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  266 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWL 475
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS  Y L  K P+++IAIIE SVSPGGGAWL
Sbjct:   48 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWL 118          
BLAST of FC930298 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  411 KTPTFRLLLSNSLLAPAVARGCG-QLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFNAVAAEDLI 671
            K P  ++ +  + ++P      G QLFSAM++RKPA  FL E+G+ Y+++ +YVV+KHAALFTSTIMSK+L  P  +LFNA   EDLI
Sbjct:   93 KRPDLKIAIIEASVSPGGGAWLGGQLFSAMIMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQMPNIKLFNATCVEDLI 180          

HSP 2 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  266 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWL 475
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L  K P+++IAIIE SVSPGGGAWL
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWL 114          
The following BLAST results are available for this feature:
BLAST of FC930298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THI4_CITSI1.004e-6696.97Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL8.857e-3963.49Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH4.395e-3859.73Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI4_ASPOR3.539e-3763.38Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI41_MAIZE7.262e-3354.79Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.239e-3254.86Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI2_SCHPO1.009e-1852.27Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA8.541e-1852.27Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_FUSSH1.115e-1752.27Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.115e-1751.14Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]

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Properties
Property NameValue
Genbank descriptionC34006A01EF PostHarvC1 Citrus clementina cDNA clone C34006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930298 ID=FC930298; Name=FC930298; organism=Citrus clementina; type=EST; length=673bp
TCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAG
CAGGGGAAGGAGGGGTAAAAAAAAAAAACATGGCAGCCATGGCTTCTACA
GCTTTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTGACTCATC
CTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCA
AATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCT
TATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTC
TCGTGAAATGACGCGCAGGTACATGACGGACATGATCACTTATGCTGACA
CTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTAT
GAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGT
TAGCCCCGGCGGTGGCGCGTGGCTGTGGACAGCTCTTCTCTGCCATGGTT
GTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGA
TGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCA
CTATAATGAGCAAGCTCCTGGCCCGCCCCAAACGTCAGCTCTTTAATGCA
GTGGCAGCCGAGGACTTGATAGT
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