FC930301

Overview
NameFC930301
Unique NameFC930301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14566 contig Ccv1_Contig14566:20..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930301 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.067e-45
Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 3 
Query:  249 NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMLESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKY 653
            N FDFS M+ +LNDPSI+E+AEQIAKDPAFN +AEQLQ+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  L++ +NP   +   ERMA++KEDP LKPILDEI++GGPSAMMKY
Sbjct:   45 NAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSNPETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKY 179
The following BLAST results are available for this feature:
BLAST of FC930301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH2.067e-4563.70Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34006A04EF PostHarvC1 Citrus clementina cDNA clone C34006A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930301 ID=FC930301; Name=FC930301; organism=Citrus clementina; type=EST; length=653bp
AGGTTTTATTCTTAATTTTAAACCCAATCTAATCTCAATCTCCTTCACAG
TCTCTCCGATTCAGCAGCTGTTTAGTTCGCATGGCGTCTCCTCCCACCAA
GGATGCTCCCGCTGATAAGAAAGCAGAAGGATCGACCCCTAAGTCAGAAG
CAACTTCGGGGTCTGTTAGAGACTCATCCAGTTCGCCTTCCGCTGCTTCT
GCTGCTTCTGCTGCAAGTGCTTTTCCAGGAGTTGGTGGCGCTGCTCCAAA
TCCTTTTGATTTCTCCGCCATGAGTGGCCTTCTTAATGATCCGAGCATTA
AGGAACTAGCTGAACAGATTGCGAAAGATCCAGCATTCAATTCCATGGCC
GAGCAACTTCAGAAAACTTTGCATGGTGCAAATGCTGAGGAGAGTATTCC
ACAGTTTGACACAACACAGTATTACTCCACCATGCAACAGGTTATGCAGA
ATCCTCAGTTTATGACTATGGCTGAGCGCCTTGGTAATGCTTTAATGCAG
GACCCATCAATGTCTCATATGCTGGAGAGTTTGACAAACCCTACAAAAAA
AGACCAGATCGAGGAAAGAATGGCAAAAATCAAGGAAGATCCCTCTTTGA
AGCCTATTTTGGATGAGATAGAGTCTGGTGGACCATCTGCTATGATGAAG
TAC
back to top