FC930306

Overview
NameFC930306
Unique NameFC930306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3717 contig Ccv1_Contig3717:213..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 6.738e-98
Identity = 180/214 (84.11%), Postives = 191/214 (89.25%), Query Frame = 1
Query:   46 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMTTT+LGF ISMPIMIAPTA QKMAHPEGE          GTIMTLSSWATSSVEEV+STGPGIRFFQLYV KDRNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLKN+EG+  GKMDK +DSGL+SYVA QIDRSL+WKD
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKD 215          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.271e-96
Identity = 176/214 (82.24%), Postives = 192/214 (89.72%), Query Frame = 1
Query:   46 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            EITNV EY+A+AK+KLPKMVYDYYASGAEDQWTLQENRNAF+RILFRPRIL DVSKIDMTTTVLGF ISMPIM+APTA QKMAHP+GE          GTIMTLSSWATSSVEEV+STGPGIRFFQLYV K+RNV  QLV+RAERAGFKAIALTVDTPRLGRRE+DIKNRF LPP+LTLKN+EGL  GKMD+ +DSGLASYVA QIDR+L+WKD
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKD 215          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.339e-95
Identity = 173/214 (80.84%), Postives = 190/214 (88.79%), Query Frame = 1
Query:   46 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            EITNV EY+A+AK KLPKMVYDYYASGAEDQWTLQENRNAF+RILFRPRIL DV+KIDM TTVLGF ISMPIM+APTAFQKMAHP+GE          GTIMTLSSWATSSVEEV+STGPGIRFFQLYV K+R V  QLV+RAE+AGFKAIALTVDTPRLGRRE+DIKNRF LPP+LTLKN+EGL  GKMD+ +DSGLASYVA QIDR+L+WKD
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKD 215          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.737e-53
Identity = 111/214 (51.87%), Postives = 147/214 (68.69%), Query Frame = 1
Query:   58 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE--GLYFGKMDK-TDDSGLASYVANQIDRSLNWKD 687
            + +YE  AK  LPK +YDYY SGA D+ TL +N  AFSR    PR+LR+V++ D++T+VLG  +SMPI +  TA Q+MAH +GE          GT M LSSWATSS+EEV+  GP  +R+ QLY+ KDR V  +LV++AE+ G+KAI +TVDTP LG R  D++NRF LPP L +KN+E   L F   +   DDSGLA+YVA  ID S++W+D
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWED 221          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.602e-53
Identity = 111/214 (51.87%), Postives = 142/214 (66.36%), Query Frame = 1
Query:   58 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEG---LYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            + +YE   +  L K VYDYY SGA DQ TL +N  AFSR    PR+LR+V+ ID++T+VLG  +SMPI +  TA Q MAH +GE          GT M LSSWATSS+EEV+  GP  +R+ QLY+ KDR +  Q+VKRAE+ G+KAI +TVDTP LG R  D++NRF LPP L +KN+E     +  K +  D+SGLA YVA  ID SL+W D
Sbjct:    8 ISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDD 221          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.522e-49
Identity = 112/217 (51.61%), Postives = 134/217 (61.75%), Query Frame = 1
Query:   40 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSS-TGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            +    +V E    AK  LPKM YDYYASG+ DQ TL EN NAFSRI   PR L DVSK++  T + G +IS PI+IAP A Q+MA   GE           TIMTLSS +T+SVE++SS T     +FQLYV KDR V  +LVKRAE  G+ A+ LTVDTP LG+R AD KN F LP  L+LK +E L    +    D GL  Y+A  ID SL W D
Sbjct:   28 LDSFVSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLYVFKDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNSFKLPNGLSLKIFEKLMLSNL----DGGLNQYIATMIDPSLTWND 240          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 1
Query:   64 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            ++   A+E L K  +D+   GA+D  T  EN  AF +I  RPR L+DVSK+DM TT+ G  IS PI IAPT F ++A P+GE                S++A+ S+E++ +  P G+R+FQLYV  +R ++ Q++++ E  GFKA+ +TVD P++G R  DI N+  L   L LK+      G +       +  +  + ID S+ W+D
Sbjct:    8 DFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQVDLMKKLLLKDLGSPEMGNV-------MPYFQMSPIDPSICWED 209          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.208e-32
Identity = 79/219 (36.07%), Postives = 123/219 (56.16%), Query Frame = 1
Query:   40 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTG-PG-IRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYFGKMDKTDDS-GLASYVANQIDRSLNWKD 687
            +S++ N+ ++E +A++ LP     YY S A+D+ TL+EN NA+ RI F P+IL DV  +D++T   G   S P  I+ TA  K+ HPEGE            +  +S+ A+ S +E++    PG  +++QLYV  DR++  + V+ AE  G K + +TVD P LGRRE D+K +F     +          G  +  D S G +  +++ ID SL+WKD
Sbjct:  184 LSQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMISTLASCSFDEIADARIPGQQQWYQLYVNADRSITEKAVRHAEERGMKGLFITVDAPSLGRREKDMKMKFEADSDVQ---------GDDEDIDRSQGASRALSSFIDPSLSWKD 393          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 74/180 (41.11%), Postives = 110/180 (61.11%), Query Frame = 1
Query:   64 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 600
            +++A A+++L K  +D+    A+D  T  EN  AF RI  RPR LRD+SK+D  TT+ G  IS PI I+PTAF  +A P+GE               +SS+A+ S+E++ +  P G R+FQLY+  D + + Q+V+RAE  GFKA+ +T+DTP LG R  D +N+  L  ++ LK+   L
Sbjct:    8 DFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRAL 187          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 82/232 (35.34%), Postives = 128/232 (55.17%), Query Frame = 1
Query:   22 ESIMTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF----VLPPHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            +S++  +  I N+ ++E LA + L K  + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D++T +LG ++ +P  ++ TA  K+ +P EGE           T     I TL+S +   + E + +   I+++QLYV  DR +   LVK  E+ G KA+ +TVD P LG+RE D+K +F      P  +   N E          +  G +  ++  ID SL WKD
Sbjct:  193 KSLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKD 414          
The following BLAST results are available for this feature:
BLAST of FC930306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX_SPIOL6.738e-9884.11Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH1.271e-9682.24Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH5.339e-9580.84Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN1.737e-5351.87Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE6.602e-5351.87Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX_DICDI1.522e-4951.61Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_BOVIN5.256e-3437.32Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
CYB2_HANAN2.208e-3236.07Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
HAOX2_RAT3.766e-3241.11Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
CYB2_YEAST4.919e-3235.34Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionC34006A09EF PostHarvC1 Citrus clementina cDNA clone C34006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930306 ID=FC930306; Name=FC930306; organism=Citrus clementina; type=EST; length=687bp
GGTTGCTTAAGGAAGCCAAGCGAGAGCATTATGACTTATATATCGGAGAT
CACCAATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGA
TGGTTTATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAG
GAAAACCGCAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAG
AGATGTAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTT
CCATGCCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCT
GAAGGGGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCAT
GACATTATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGG
GACCTGGAATTCGCTTTTTCCAACTCTATGTGACCAAGGACAGGAATGTG
GACGCACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGC
CCTTACCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGA
ACAGATTTGTTTTGCCGCCACATCTGACTTTGAAGAACTATGAGGGCTTG
TATTTTGGCAAGATGGATAAGACTGATGACTCTGGATTAGCTTCGTATGT
TGCCAACCAAATTGACCGGTCACTGAACTGGAAGGAT
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