FC930309

Overview
NameFC930309
Unique NameFC930309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930309_ssr52 microsatellite FC930309_ssr52:52..75. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930309_ssr42 microsatellite FC930309_ssr42:42..53. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930309_ssr54 microsatellite FC930309_ssr54:54..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15135 contig Ccv1_Contig15135:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 8.046e-91
Identity = 161/176 (91.48%), Postives = 171/176 (97.16%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            MGQQSLIYSFVARGTVILAEYTEF GNFTS+A+QCLQKLP++NNKFTYNCDGHTFNYL +NGFTYCVV +ESAGRQIP+AFLERVKEDFNKRYGGGKA+TA ANSLNKEFGSKLKEHMQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 176          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 8.046e-91
Identity = 164/182 (90.11%), Postives = 175/182 (96.15%), Query Frame = 1
Query:  145 VRVLR-MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            +RV R MGQQ+LIYSFVARGTVIL EYTEF GNFT++A+QCLQKLP++NNKFTYNCDGHTFNYLVENGFTYCVVAVES GRQIP+AFLERVKEDFNKRYGGGKA TA ANSLN+EFGSKLKEHMQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF
Sbjct:   60 LRVTRTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 241          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 8.046e-91
Identity = 163/176 (92.61%), Postives = 172/176 (97.73%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            M QQSLIYSFVARGTVIL E+T+F GNFTSIA+QCLQKLP++NNKFTYNCDGHTFNYLVENGFTYCVVAV+SAGRQIP+AFLERVKEDFNKRYGGGKAATA ANSLNKEFGSKLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 176          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.812e-90
Identity = 161/176 (91.48%), Postives = 172/176 (97.73%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            M QQSLIYSFVARGTVIL E+T+F GNFTSIA+QCLQKLP++NNKFTYNCDGHTFNYLVE+GFTYCVVAV+SAGRQIP++FLERVKEDFNKRYGGGKAATA ANSLNKEFGSKLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 176          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 4.904e-72
Identity = 131/177 (74.01%), Postives = 153/177 (86.44%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNN-KFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            MGQ+S IYSFVARGT+ILAEYTEFTGNF SIA+QCLQKLP+++N KFTYNCD HTFN+LVE+G+ YCVVA +S  +QI IAFLERVK DF KRYGGGKA+TA+A SLNKEFG  +KEHM Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENLRSQAQ++
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEY 177          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.336e-69
Identity = 128/162 (79.01%), Postives = 143/162 (88.27%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 645
            M QQSL YSF+ARGTVIL E+T+F GNFTS+A+Q L+ LP++NNKFTYNCDGHTFN LVENGFTYCVVAV+SAGR+IP+AFLERVKEDF KRYGG KAAT  ANSLNKEFGS LKEHMQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML 162          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.161e-63
Identity = 119/195 (61.03%), Postives = 148/195 (75.90%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGG-------------------KAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            M Q+ LIYSFVA+GTV+LAE+T ++GNF++IA QCLQKLP  ++K+TY+CDGHTFN+LV+NGF + VVA ES GR +P  FLERVKEDF KRY                          +VA +L++EFG  LKEHMQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKTENL+ QA  F
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSF 195          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.486e-31
Identity = 70/173 (40.46%), Postives = 116/173 (67.05%), Query Frame = 1
Query:  172 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNK-FTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            +++Y+ VARGTV+L+E+T  + N ++IA Q L+K+P  N+   +Y+ D + F+    +G T   +A E+AGR+IP AFLE + + F + YG     TA+A ++N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N++     F
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRF 172          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 70/174 (40.23%), Postives = 116/174 (66.67%), Query Frame = 1
Query:  172 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPA--TNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            ++I++ VARGTV+L+E++  + N +SI+ Q L+KLP   +++  +Y+ D + F+    +G T   +A E+AGR IP AFL+ + + F K YG     +A A S+N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN++     F
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRF 173          
BLAST of FC930309 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 63/172 (36.63%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  172 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 687
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R    +FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTF 171          
The following BLAST results are available for this feature:
BLAST of FC930309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA726_ARATH8.046e-9191.48Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH8.046e-9190.11Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH8.046e-9192.61Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH6.812e-9091.48Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA724_ARATH4.904e-7274.01Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH1.336e-6979.01Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH4.161e-6361.03Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA711_ARATH5.486e-3140.46Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH6.065e-3040.23Vesicle-associated membrane protein 713 OS=Arabido... [more]
VAMP7_MOUSE9.683e-2836.63Vesicle-associated membrane protein 7 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionC34006A12EF PostHarvC1 Citrus clementina cDNA clone C34006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930309 ID=FC930309; Name=FC930309; organism=Citrus clementina; type=EST; length=691bp
GCTTCTTTAGTTTCCCTCTCTCCGATCCCACGGTTTTCCTCTCCTTCCTT
CCTCTCTCTCTCTCTCTCTCTCTCTAATTTTTGTTTTTTCTGCTCCTCAT
TTTTTTTTGTCAATTGAATCTTTCATCTCGAATTTGAATCTAGGGTTAGG
GTTTTGAGGATGGGCCAACAGTCGTTGATCTATAGCTTCGTGGCTCGAGG
CACGGTGATCCTCGCCGAGTACACTGAGTTCACCGGTAATTTCACGAGCA
TCGCATCGCAATGTCTCCAGAAACTTCCCGCTACCAATAACAAGTTCACC
TACAACTGCGATGGCCACACCTTCAATTACCTCGTTGAGAACGGCTTCAC
CTATTGTGTGGTTGCTGTTGAATCTGCTGGCAGGCAAATTCCAATTGCCT
TTCTGGAGCGAGTTAAGGAGGATTTCAACAAGAGATATGGTGGAGGAAAA
GCTGCAACGGCTGTTGCAAATAGCCTGAACAAAGAGTTTGGGTCTAAACT
AAAGGAGCACATGCAGTATTGTGTGGATCATCCTGAAGAGATCAGCAAGC
TTGCCAAAGTCAAAGCTCAGGTTTCTGAAGTCAAGGGGGTTATGATGGAA
AATATTGAGAAGGTTCTTGATCGTGGTGAGAAGATTGAGCTGCTGGTTGA
CAAAACTGAGAACCTTCGGTCACAGGCACAAGATTTCCCGA
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