FC930330

Overview
NameFC930330
Unique NameFC930330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3081 contig Ccv1_Contig3081:104..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 2.165e-51
Identity = 101/153 (66.01%), Postives = 113/153 (73.86%), Query Frame = 1
Query:   22 FVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            FVL TC+VAAMGGLIFGYDIGISGGVTSMPSFLK+FFPSVYRKQQ + STN YC+YDS TLTMFT                VTR+FGR+LSM                   +WMLIVGR+LLGFGIGFANQ+VPLYLSEMAPY++RGAL+IGF
Sbjct:   22 FVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGF 174          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.165e-51
Identity = 100/154 (64.94%), Postives = 116/154 (75.32%), Query Frame = 1
Query:   19 LFVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            L+V VTC+VAAMGGLIFGYDIGISGGVTSM SFLKKFFPSVYRK++A+ES+N YC+YDS+TLTMFT                +TR+FGRKLSM                   +WMLI+GR+LLGFGIGFANQSVPLYLSEMAPY++RGAL+IGF
Sbjct:   23 LYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGF 176          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.478e-47
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 1
Query:   10 KKALFVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            K  L+V VTCIVAAMGGLIFGYDIGISGGVT+M SF +KFFPSVY KQ+ +  +N YC++DS +LT+FT                VTRQFGRK+SM                   +WMLIVGRLLLGFGIGF NQSVPLYLSEMAPY++RGAL+IGF
Sbjct:   18 KLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPSVYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGF 174          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.232e-38
Identity = 84/154 (54.55%), Postives = 97/154 (62.99%), Query Frame = 1
Query:   22 FVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNL-YCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            FV++TCIVAAMGGL+FGYDIGISGGV SM  FL KFFP V R+ Q        YCKYD+E LT+FT                +TR FGRK+SM                   + MLI+GRL LG G+GFANQSVPLYLSEMAP + RGAL+IGF
Sbjct:   23 FVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGF 176          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.746e-38
Identity = 82/153 (53.59%), Postives = 102/153 (66.67%), Query Frame = 1
Query:   22 FVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            FV ++C++AAMGG+IFGYDIG+SGGVTSM  FLKKFFP VYRK + +   + YCK+DS+ LT FT                VTR FGRK S+    X    X         ++MLI GR+LLG G+GFANQ+VPLYLSEMAP R+RGA++ GF
Sbjct:   21 FVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGF 173          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.043e-37
Identity = 79/154 (51.30%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   19 LFVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            +FV++TCIVAAMGGL+FGYD+GISGGVTSM  FL KFFP V ++         YCK+D++ L +FT                VTR++GRK+SM                   + MLIVGRLLLG G+GFANQS P+YLSEMAP + RGAL+IGF
Sbjct:   23 VFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGF 176          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.968e-36
Identity = 77/153 (50.33%), Postives = 97/153 (63.40%), Query Frame = 1
Query:   22 FVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            FV++TCIVAAMGGL+FGYD+GISGGVTSM  FL KFFP V  + +  +    YCK+D++ L +FT                +TR+ GRK+SM                   + MLI+GRLLLG G+GFANQS P+YLSEMAP + RGAL+IGF
Sbjct:   24 FVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGF 176          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.666e-35
Identity = 77/152 (50.66%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   25 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            V VTC + A GGLIFGYD+GISGGVTSM  FL++FFP VY+K ++    N YC++DS+ LT+FT                +TR FGRK SM                   I ML++GR+LLGFG+GFANQSVP+YLSEMAP   RGA + GF
Sbjct:   23 VFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGF 173          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STP3_ARATH (Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.141e-34
Identity = 77/162 (47.53%), Postives = 98/162 (60.49%), Query Frame = 1
Query:   10 KKALFVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQAN-----ESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            K   FV+ +C++AAMGG+IFGYDIG+SGGV SM  FLK+FFP VY+ Q+ +      S N YC ++S+ LT FT                VTR +GRK S+                   + MLI+ RLLLG G+GFANQSVPLYLSEMAP ++RGA+  GF
Sbjct:   19 KITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGF 180          
BLAST of FC930330 vs. ExPASy Swiss-Prot
Match: STP5_ARATH (Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.140e-34
Identity = 76/152 (50.00%), Postives = 96/152 (63.16%), Query Frame = 1
Query:   25 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALDIGF 480
            V+++CIVAA  GLIFGYDIGISGGVT+M  FL+KFFPSV +K  +   TN+YC YDS+ LT FT               R+T  +GR+ +M                   I MLI GR+LLGFG+GF NQ+ P+YLSE+AP R+RGA +IGF
Sbjct:   24 VVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVLKK-ASEAKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFGALINGLAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGF 174          
The following BLAST results are available for this feature:
BLAST of FC930330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
STP1_ARATH2.165e-5166.01Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STC_RICCO2.165e-5164.94Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
STP12_ARATH2.478e-4760.51Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
STP11_ARATH1.232e-3854.55Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
HEX6_RICCO2.746e-3853.59Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
STP9_ARATH1.043e-3751.30Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STP10_ARATH1.968e-3650.33Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
STP4_ARATH1.666e-3550.66Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
STP3_ARATH3.141e-3447.53Sugar transport protein 3 OS=Arabidopsis thaliana ... [more]
STP5_ARATH9.140e-3450.00Sugar transport protein 5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34006C09EF PostHarvC1 Citrus clementina cDNA clone C34006C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930330 ID=FC930330; Name=FC930330; organism=Citrus clementina; type=EST; length=481bp
TGGCATTAAAAGAAAGCATTGTTCGTGTTAGTAACATGTATTGTTGCTGC
CATGGGTGGCCTCATCTTTGGTTATGATATTGGGATTTCAGGTGGTGTGA
CCTCAATGCCTTCATTTTTGAAGAAGTTTTTCCCGTCGGTGTACAGGAAG
CAACAGGCGAACGAGTCAACGAATCTGTACTGTAAGTATGACAGTGAGAC
GTTGACTATGTTCACGTCGTCGCTTTACTTGGCTGCTCTATTATCATCAC
TGGTGGCGTCAAGGGTGACGAGACAATTCGGAAGAAAACTGTCTATGTTT
TTCGGCGGTATCCTGTTTCTTGCCGGTGCCTTGCTCAATGGCTTCGCCCA
AGCCATTTGGATGCTTATTGTTGGCCGACTTTTGCTCGGTTTCGGCATCG
GTTTCGCTAACCAGTCCGTGCCACTCTACCTCTCTGAGATGGCTCCATAC
AGATTCAGAGGTGCTTTGGACATTGGGTTTC
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