FC930335

Overview
NameFC930335
Unique NameFC930335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9817 contig Ccv1_Contig9817:6..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            MALPVSAIGF G+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVL
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVL 70          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 3
Query:  519 ALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            ALPVSAIGF G+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVL
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVL 70          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 3
Query:  513 KMALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            +M LPVSAIGF G+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSYVL
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVL 70          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 3
Query:  513 KMALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            +M LPVSAIGF G+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSYVL
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVL 70          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            MALP SAIGF GYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN+YLDSYVL
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLDSYVL 68          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            M LPVSAIGF G+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +LSN+Y+DSYVL
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSNDYVDSYVL 68          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            MAL  SAIGF GYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVL
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVL 68          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            MAL  SAIGF GYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVL
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVL 68          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            M+  VSAIGF G+EKRLE+SFFEP  FADP G+GLR LSK+QLDE L PAECTIV+SLSNE++DSYVL
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDSYVL 68          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + +SAIGF G+EKRLE+SFFEPG+F DP G+GLR+LSK QLDEIL PAECTIV SL+NE +DSYVL
Sbjct:   25 MALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAQLDEILGPAECTIVDSLANESVDSYVL 90          
The following BLAST results are available for this feature:
BLAST of FC930335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_NICSY6.250e-2582.35S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_TOBAC2.375e-2482.09S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLTU2.375e-2478.26S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST5.291e-2476.81S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_CATRO5.291e-2477.94S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_SOLCI6.910e-2477.94S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_IPONI1.539e-2377.94S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA5.850e-2376.47S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_DAUCA4.952e-2275.00S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM1_DIACA1.103e-2174.24S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34006D07EF PostHarvC1 Citrus clementina cDNA clone C34006D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930335 ID=FC930335; Name=FC930335; organism=Citrus clementina; type=EST; length=719bp
GAAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAACAGAG
TTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTGG
TCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTTA
TATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAGA
AGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAGC
ATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTGC
TTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCCA
TACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAG
TTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACT
TCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGT
TTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGGAGG
TTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTG
ATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAA
ATACTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAATA
TCTTGATTCATATGTCCTC
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