FC930365

Overview
NameFC930365
Unique NameFC930365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930365_ssr126 microsatellite FC930365_ssr126:126..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6813 contig Ccv1_Contig6813:3..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930365 vs. ExPASy Swiss-Prot
Match: Y1601_ANASP (Uncharacterized protein all1601 OS=Anabaena sp. (strain PCC 7120) GN=all1601 PE=4 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.583e-46
Identity = 89/161 (55.28%), Postives = 118/161 (73.29%), Query Frame = 1 
Query:  202 KRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTIPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLL 684
            +++K + P    PAK+ CS CGLCDTYYI +VK+ACAF+     +I+ LE   H R R  D+ D+ Y GVH++++ A+K  P+ GAQWTGIV++IAIEML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  VE +G+KRLL
Sbjct:    8 QKAKALKPNSRRPAKELCSECGLCDTYYIHYVKEACAFI---TQQIDTLEEQAHQRSRNLDNPDELYFGVHQDMIAAKKQQPIAGAQWTGIVSSIAIEMLNHGLVEGVVCVQNSKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMKRLL 165
The following BLAST results are available for this feature:
BLAST of FC930365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1601_ANASP4.583e-4655.28Uncharacterized protein all1601 OS=Anabaena sp. (s... [more]
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Properties
Property NameValue
Genbank descriptionC34006G05EF PostHarvC1 Citrus clementina cDNA clone C34006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930365 ID=FC930365; Name=FC930365; organism=Citrus clementina; type=EST; length=688bp
GAACTCGGAGCTTAGCAGCAAGCAGCTTTCTTTCGCTCTGCGTAATCAAG
AATCAAGAAGATGACATGTTTCATTGCAAATGCCAAATTCTCTTCGCTTC
CTCTATCAATCTCCACTATTTGTTGTTCTTCTTCTTCTTCCTCCTCTTCA
TCTCCTTCTAAAGATGGAAGCAAGTCAGTGAAGCTGAGAGAAGACTGGAG
AAAACGGTCGAAACCCATTCCACCCGGGGGCACCTATCCCGCTAAAGACC
ATTGCAGTCGATGCGGTCTCTGTGATACTTACTACATCGCCCATGTAAAG
GATGCCTGTGCTTTCCTTGGTGATGGAATGTCCAGAATTGAAGGCTTGGA
AACTGTGGTTCATGGTAGAGGGAGGAGAAAAGATTCCTTGGATGATACTT
ACTTGGGGGTCCATGAGGAGCTGTTATATGCTCGGAAAACTATACCAGTA
GAGGGAGCTCAATGGACAGGGATAGTGACAACTATTGCTATTGAGATGCT
GAAAACAGGCATGGTTGAGGCAGTCGTTTGTGTACAGAGCGATCCAGATG
ATAGGCTTAGCCCAAGGCCGGTTTTAGCAAGGACACCAGAGGAAGTTCTG
GCTGCTAAAGGAGTTAAGCCAACATTATCACCTAATCTGAATACCCTCGC
CTTAGTTGAGGCAGCAGGTGTAAAGCGTCTTCTTTTCT
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