FC930390

Overview
NameFC930390
Unique NameFC930390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15322 contig Ccv1_Contig15322:4..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.025e-43
Identity = 87/207 (42.03%), Postives = 131/207 (63.29%), Query Frame = 2
Query:  101 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGA-CPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQF-NPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 715
            +MPF+I NE FEK+ + G   N+++YL   +       T ++ ++S  +NF  LLGAFLSD+Y GR+ T+  AS++SFLGM++L LTA + ++ P  C    +G+ C   T  QLA L++   L+ IG+GGIRPC+LAFGADQ  N      ++ + SFF WYY +   A++I+ T IVY+Q  + W  G G+PA +M ++  +F L
Sbjct:   27 TMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFIL 233          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42
Identity = 83/208 (39.90%), Postives = 122/208 (58.65%), Query Frame = 2
Query:   95 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            WK+ PF++GNE  E+L   G + NL+ YLTT  +  +++A T +  + GT     L+GA L+D Y+GRY T+   S   F+GM  L+L+A++  L P +C       CP  TP Q A  F GL L+ +G GGI+PC  +FGADQF+      +    SFFNW+YF+     ++S +++V++Q +  W  G GIP   M L+ A FF G
Sbjct:   45 WKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD---FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFG 249          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.878e-40
Identity = 81/208 (38.94%), Postives = 123/208 (59.13%), Query Frame = 2
Query:   95 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            WK+  F++G E  E+L   G S+NL+ YL    NM++++A+  ++ +SGT     L+GAF++D Y GRY T+    V    GM +L+++A++  L  P C  +   A  G T    A  F  L L+ +G GGI+PC  +FGADQF+   E  K+  +SFFNW+YF      MI+ +V+V++Q +V W WGLG+P   M ++   FF G
Sbjct:   29 WKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGETCHATAGQT----AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAG 231          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 81/208 (38.94%), Postives = 121/208 (58.17%), Query Frame = 2
Query:   95 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            WK+  F++GNE  E+L   G  +NL+ YL +  N  + TA   +  +SGT     L+GAF++D Y GRY T+         GM +L+L+A++  L P   GN ++  C  P   Q A  F  L ++ +G GGI+PC  +FGADQF+ N E+ K   +SFFNW+YF+     +I+ TV+V++Q +V W WG G+P   M ++   FF G
Sbjct:   28 WKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP---GNCNADTCH-PNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFG 231          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 74/208 (35.58%), Postives = 112/208 (53.85%), Query Frame = 2
Query:   95 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            WK+  FV+  E FE++   G SSNL +Y+TT  +  ++ ++  +  + GT+    +LGA++ D   GRY T   +    F GM+VL+L+  I  + PP+C   +   C   +  QLA  F  L  + IG GG +P     GADQF+      K    SFFNW+ F+  F  + + TV+VYVQ +V W  G G+P   + +S  +F LG
Sbjct:   31 WKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLG 238          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 75/208 (36.06%), Postives = 114/208 (54.81%), Query Frame = 2
Query:   95 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            WK+  FV+  E FE++   G SSNL++Y+TT  +  ++ ++  +  + GT+    +LGA+++D +FGRY T   +S    LGM +L+L+ ++  L PP C   +   C   +  QLA  F  L  + IG GG +P     GADQF+      K    SFFNW+ F+  F    + TV+VYVQ +V WA G G+    +  S  +F LG
Sbjct:   31 WKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLG 238          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.256e-33
Identity = 73/209 (34.93%), Postives = 111/209 (53.11%), Query Frame = 2
Query:   92 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            GW S   ++  E  E+L T G   NL+ YLT   ++ + TA   +  F GT+    LLG F++DT+ GRY T+   +     G+ +L+L+  I  L PP C    S  C   +  QL  L+  L L  +G GG++     FG+DQF+      +  +T FFN ++F      ++++TV+VYVQ DV   WG GI AF + L+ ++F  G
Sbjct:   30 GWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAG 238          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PEPT1_DROME (Peptide transporter family 1 OS=Drosophila melanogaster GN=yin PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 67/214 (31.31%), Postives = 102/214 (47.66%), Query Frame = 2
Query:   98 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-------SWAWGLGIPAFMMFLSCAMFFLG 718
            KS+ F+I NE  E+    G  + L++YLT        TAT L + F+       L+GA ++D + G+YKT+ + S+   LG +V+S                  GA P       A    GL L+ IG GGI+PC  AFG DQF+   +S +  +  FF+ +YF      +IS T    +++DV        ++   G+PA +M  S  +F  G
Sbjct:   34 KSVAFIISNEFCERFNYYGMRTILVLYLTNKLGYNEETATVLFHTFTMLVYIFPLIGALIADGWLGKYKTILYLSLVYSLGAMVVSF-----------------GAVPLSGMPTKAVTVVGLLLIAIGTGGIKPCVSAFGGDQFSLPAQSFQ--LAKFFSLFYFAINAGSLISTTFTPILRADVHCFGDQDCFSLAFGVPAILMIFSVIIFMAG 228          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: S15A2_HUMAN (Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 58/214 (27.10%), Postives = 101/214 (47.20%), Query Frame = 2
Query:  101 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACP--GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS------WAWGLGIPAFMMFLSCAMFFLG 718
            S+ F++ NE  E+    G  + L++Y     +    T+T++ + FS    F  +LGA ++D++ G++KT+ + S+   LG ++ SL                 GA P  G           GL L+ +G GGI+PC  AFG DQF    E   +  T +F+ +Y +     +IS  +   ++ DV       +A   G+P  +M ++  +F +G
Sbjct:   45 SIAFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVIKSL-----------------GALPILGGQVVHTVLSLIGLSLIALGTGGIKPCVAAFGGDQFE---EKHAEERTRYFSVFYLSINAGSLISTFITPMLRGDVQCFGEDCYALAFGVPGLLMVIALVVFAMG 238          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: S15A3_HUMAN (Solute carrier family 15 member 3 OS=Homo sapiens GN=SLC15A3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 62/215 (28.84%), Postives = 100/215 (46.51%), Query Frame = 2
Query:  125 ETFEKLGTTGTSSNLLVYL-TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSG----ACPG-------PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP------AFMMFLSCAMFFL 715
            E  E+    G ++NL++YL +T FN     AT    +F G +     +G +L+D Y GRY+ +   S+  +L    L    A        CG   +     ACP        P+P+    L+ GL L+ + A  +R    +FGADQ     + G+     FFNW+Y++     ++SL V+ ++Q ++S+  G  IP      AF +FL     F+
Sbjct:   42 EMLERAAFFGVTANLVLYLNSTNFNWTGEQATRAALVFLGASYLLAPVGGWLADVYLGRYRAVAL-SLLLYLAASGLLPATAFPDGRSSFCGEMPASPLGPACPSAGCPRSSPSPYCAPVLYAGLLLLGLAASSVRSNLTSFGADQV---MDLGRDATRRFFNWFYWSINLGAVLSLLVVAFIQQNISFLLGYSIPVGCVGLAFFIFLFATPVFI 252          
The following BLAST results are available for this feature:
BLAST of FC930390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PTR2X_ARATH1.025e-4342.03Probable peptide transporter At1g52190 OS=Arabidop... [more]
PTR2_ARATH3.299e-4239.90Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH6.878e-4038.94Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH1.532e-3938.94Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR3A_ARATH2.532e-3435.58Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR3B_ARATH5.640e-3436.06Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
CHL1_ARATH1.256e-3334.93Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PEPT1_DROME9.339e-2131.31Peptide transporter family 1 OS=Drosophila melanog... [more]
S15A2_HUMAN4.338e-1827.10Solute carrier family 15 member 2 OS=Homo sapiens ... [more]
S15A3_HUMAN7.400e-1828.84Solute carrier family 15 member 3 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34007A09EF PostHarvC1 Citrus clementina cDNA clone C34007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930390 ID=FC930390; Name=FC930390; organism=Citrus clementina; type=EST; length=720bp
GAACTTTGAGCACTCTTTTCCAGACACCATGGAGAAGAACAGTAAGACAG
CAGTTGTTGCGACAGATGATGAGCCTCAGCTCAACTACAGGGGATGGAAA
TCAATGCCTTTTGTTATAGGAAATGAAACTTTTGAAAAGCTGGGGACTAC
TGGCACTTCCTCCAACCTCTTGGTATATTTGACAACCATATTCAACATGA
AAAGTATCACGGCAACAACTCTCATTAACATCTTCAGTGGTACCACAAAT
TTTGCCACCTTGCTCGGAGCATTCCTGTCCGATACTTACTTTGGCCGGTA
CAAGACTCTGGGATTCGCTTCTGTTGCCTCTTTTCTGGGGATGCTTGTAC
TTTCTTTGACAGCAGCAATCTCAAAACTGCACCCACCTGATTGTGGAAAT
CAAGATTCTGGAGCGTGCCCTGGGCCAACACCATGGCAACTGGCTTTTCT
GTTCACTGGGCTAGGACTGATGGTAATTGGAGCTGGCGGCATTAGGCCAT
GTAACTTGGCCTTTGGTGCTGACCAATTTAATCCCAATACTGAATCTGGG
AAGCAGGGAATCACCAGCTTCTTCAATTGGTACTACTTCACCTTCACCTT
CGCGATGATGATATCTTTGACAGTCATTGTTTACGTGCAATCGGATGTGA
GCTGGGCCTGGGGATTGGGAATCCCTGCATTTATGATGTTCTTATCCTGT
GCAATGTTCTTCCTGGGATC
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