FC930406

Overview
NameFC930406
Unique NameFC930406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL12_CAEBR (Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis briggsae GN=ttll-12 PE=4 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45
Identity = 101/253 (39.92%), Postives = 150/253 (59.29%), Query Frame = 1
Query:   13 VNQFPFESCLVMKHHLAETVQKAHGSPEWFQPTYNLEMHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAIIRLMETGPKICQKYIEFPALF------QGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNY--GRRFNHMNTPDFVRGFEAEH-QVKWLEIHQRVKNTIRSVFQAAAVAHPEMH----SSKSRAMYGVDIMLDSS------FQPKXLEVTY 714
            +NQFPFESC+ +K  LA    +     +W+Q TYNL   LP+ +  +  R+++G +N+WI+KPWN+AR ++ +VTDDL+ IIR++ETGPKI  +YI  P LF         KFDLRYIV V ++ P+  ++ + FW+R A N + L   ++ + ETHFTV NY    +   M    FV   E  + ++KW +I   + +TIR   + AA + P       +++SRAMYGVDIML  S       +P  LE+ +
Sbjct:  388 INQFPFESCITVKDLLAACAMRDPSKNDWYQLTYNLNTQLPEFVARFQNRQKNGEHNVWIVKPWNLARGMEMAVTDDLNQIIRMVETGPKIVCEYIARPLLFPRPDNGNKVKFDLRYIVFVNAIGPVTAYVYNRFWIRFAINQFQLG--AYDDLETHFTVFNYLDKEKVLQMKCEKFVEIIEKTYPKLKWTQIQADINSTIRKAIEVAA-SEPSPRGVAPNTQSRAMYGVDIMLQESPESPDVIKPTLLEINF 637          
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL12_MOUSE (Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.582e-44
Identity = 103/258 (39.92%), Postives = 146/258 (56.59%), Query Frame = 1
Query:    4 QQYVNQFPFESCLVMKHHLAETVQKAHG--SPEWFQPTYNLEMHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAIIRLMETGPKICQKYIEFPALFQGR-----KFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRR--FNHMNTPDFVRGFEAEH-QVKWLEIHQRVKNTIRSVFQAAAVAHPEM---HSSKSRAMYGVDIMLD--------SSFQPKXLEVTY 714
            Q  +NQFP E+ L +K  LA   ++A G   P W   T+NL   LPQ +  +  R+R G +N WI KPWN+AR++DT VT++L +IIR  E+ PK+  KYIE P LF        KFD+RYIVL+RS+ PL +F  DVFW+R +N P++LD     +YE HFTVMNY        ++  +F+  FE ++ +  W ++   +      +FQ A    P M       SRAMY +D+ML+           QP+ LEV +
Sbjct:  348 QVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQHRERRGEDNHWICKPWNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFLREDVGNVKFDIRYIVLLRSVRPLRLFAYDVFWLRFSNRPFALD--DLDDYEKHFTVMNYDPDVVLKQVHYNEFIPQFEKQYPEFPWSDVQAEIFKAFTELFQVACAKPPPMGLCDYPSSRAMYAIDLMLNWDNHPDGKRVMQPQILEVNF 603          
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL12_CAEEL (Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis elegans GN=ttll-12 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 97/233 (41.63%), Postives = 141/233 (60.52%), Query Frame = 1
Query:   13 VNQFPFESCLVMKHHLAETVQKAHGSPEWFQPTYNLEMHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAIIRLMETGPKICQKYIEFPALF------QGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNY--GRRFNHMNTPDFVRGFE-AEHQVKWLEIHQRVKNTIRSVFQAAA---VAHPEMHSSKSRAMYGVDIML 675
            +NQFPFESC+ +K  LA    +     +W+Q TYNL   LP+ +  +  R+ +G +N+WI+KPWN+AR +D +VT+DL+ IIR++ETGPKI  +YI  P LF         KFDLRYIV +  + P+  ++ + FW+R A N +SL   +F + ETHFTV NY    +   M   +F+   E A  +++W E+ + +  TIR   +AAA          + +SRAMYGVDIML
Sbjct:  380 INQFPFESCITVKDLLAACAMRDPAKNDWYQLTYNLNTQLPEFVARFQNRELNGQHNVWIVKPWNLARGMDMTVTEDLNQIIRMIETGPKIVCEYIPRPLLFPRPDNGNKVKFDLRYIVFLNGIAPVTAYVYNRFWIRFAINEFSLS--NFEDVETHFTVFNYLDKEKILQMKCENFIETIEKAYPRIQWSEVQKDINLTIRKAIEAAAKEEAPRGVAPNVQSRAMYGVDIML 610          
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL12_HUMAN (Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.934e-42
Identity = 100/255 (39.22%), Postives = 142/255 (55.69%), Query Frame = 1
Query:   13 VNQFPFESCLVMKHHLAETVQKAHG--SPEWFQPTYNLEMHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAIIRLMETGPKICQKYIEFPALFQGR-----KFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRR--FNHMNTPDFVRGFEAEH-QVKWLEIHQRVKNTIRSVFQAAAVAHPEM---HSSKSRAMYGVDIMLD--------SSFQPKXLEVTY 714
            +NQFP E+ L +K  LA   ++A G   P W   T+NL   LPQ +  +  R+R G +N WI KPWN+AR++DT VT  L +IIR  E+ PK+  KYIE P LF        KFD+RYIVL+RS+ PL +F+ DVFW+R +N  ++L  +   +YE HFTVMNY        ++  +F+  FE ++ +  W ++   +      +FQ A    P +       SRAMY VD+ML            QP+ LEV +
Sbjct:  356 LNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKPWNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLFLREDVGKVKFDIRYIVLLRSVRPLRLFVYDVFWLRFSNRAFAL--NDLDDYEKHFTVMNYDPDVVLKQVHCEEFIPEFEKQYPEFPWTDVQAEIFRAFTELFQVACAKPPPLGLCDYPSSRAMYAVDLMLKWDNGPDGRRVMQPQILEVNF 608          
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL3E_TETTH (Tubulin glycylase 3E OS=Tetrahymena thermophila GN=TTLL3E PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 59/198 (29.80%), Postives = 96/198 (48.48%), Query Frame = 1
Query:  163 KRDGLNNLWILKPWNMARTIDTSVTDDLS-AIIRLMETGPKICQKYIEFPALFQG--------RKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFF-EYETHFTV-MNYGRRFNHMNT----PDFVRGFEAEHQVKWLE-IHQRVKNTIRSVFQAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKXLEV 708
            K  G  N+WI+KP   +R     + D L  AI   ++   +I QKYIE P +FQG        +KFD+R  VLV S  PL+I+     ++R+ +  + LD      ++ T+F++  N   + N   T     DF+   +    + + E +  ++K+ +    + A  A   ++  KS  +YG DI+LD    P  LEV
Sbjct: 1015 KVSGTKNIWIIKPSANSRGSGIYLVDKLDEAIDSGLKMQARIVQKYIERPLIFQGAKYKKLNNKKFDIRQWVLVTSFKPLKIYFFTSSYLRVCSQSFDLDNIKILSKHLTNFSLNKNSLAKENWDETVVELKDFISYLKEFKNIDYQEDVKPKIKDLVIETIKCA--ADKIVNRKKSFELYGFDILLDEYAHPWLLEV 1210          
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL3D_TETTH (Tubulin glycylase 3D OS=Tetrahymena thermophila GN=TTLL3D PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 58/193 (30.05%), Postives = 98/193 (50.78%), Query Frame = 1
Query:  172 GLNNLWILKPWNMARTIDTSVTDDLSAII---RLMETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHS-FFEYETHFTVMNYGRR--------FNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFQAAAVAHPEMHSSKSRAM--YGVDIMLDSSFQPKXLEV 708
            G +N+WI+KP  ++R    +   +L  II   + ME    I QKYIE P L + RKFD+R  VLV   +PL I+  D  +VR + + YS    S  F++ T+  +     +          +M T + +  F  E +  +    Q++K  I ++ + + ++  +   S+  +M  +G DIM+D++F P  LEV
Sbjct:  681 GEDNIWIVKPAGLSRGRGITCYKNLVEIIDHAKSMEL-QMIVQKYIENPVLIKQRKFDIRIWVLVTDWNPLAIWYFDECYVRFSADSYSTKNLSNKFQHLTNNAISKKKAQQGQDEITLQGNMYTQEQLENFFIETE-GYNVFQQKIKPQIINIIKWSILSCSDTVESRKNSMELFGYDIMIDTNFNPWLLEV 871          
The following BLAST results are available for this feature:
BLAST of FC930406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TTL12_CAEBR7.101e-4539.92Tubulin--tyrosine ligase-like protein 12 OS=Caenor... [more]
TTL12_MOUSE1.582e-4439.92Tubulin--tyrosine ligase-like protein 12 OS=Mus mu... [more]
TTL12_CAEEL4.603e-4441.63Tubulin--tyrosine ligase-like protein 12 OS=Caenor... [more]
TTL12_HUMAN1.934e-4239.22Tubulin--tyrosine ligase-like protein 12 OS=Homo s... [more]
TTL3E_TETTH2.306e-1129.80Tubulin glycylase 3E OS=Tetrahymena thermophila GN... [more]
TTL3D_TETTH3.933e-1130.05Tubulin glycylase 3D OS=Tetrahymena thermophila GN... [more]
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Properties
Property NameValue
Genbank descriptionC34007C02EF PostHarvC1 Citrus clementina cDNA clone C34007C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930406 ID=FC930406; Name=FC930406; organism=Citrus clementina; type=EST; length=717bp
GATCAGCAATATGTAAACCAATTTCCTTTTGAGTCTTGCCTTGTAATGAA
ACATCATTTGGCAGAGACTGTTCAGAAGGCACATGGTTCTCCTGAATGGT
TTCAGCCTACTTACAATCTTGAAATGCATCTACCTCAACTTATTGGTGAC
TATTACGTACGGAAAAGAGATGGGCTTAATAATTTATGGATATTAAAACC
TTGGAACATGGCTAGGACTATTGATACCTCTGTGACTGATGATTTATCTG
CTATTATCCGTCTCATGGAAACTGGTCCAAAAATATGCCAGAAATATATT
GAGTTCCCTGCTTTGTTCCAAGGAAGGAAGTTTGATCTTCGTTACATAGT
ACTGGTTCGCAGTATGGACCCTTTAGAAATATTCCTTTCAGATGTTTTCT
GGGTTAGACTGGCAAACAATCCATATTCTTTAGACAAGCACAGTTTCTTT
GAGTACGAGACACACTTTACAGTTATGAATTATGGTCGGAGATTCAATCA
CATGAACACACCGGATTTTGTAAGGGGGTTCGAAGCGGAACACCAAGTTA
AATGGTTAGAAATTCATCAGAGAGTCAAAAATACTATCCGATCTGTCTTT
CAGGCAGCCGCTGTTGCACATCCAGAGATGCACAGTTCAAAATCTAGGGC
CATGTATGGTGTGGATATAATGCTTGATAGCTCTTTTCAGCCCAAGNTAC
TGGAGGTTACTTACTGT
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