FC930415

Overview
NameFC930415
Unique NameFC930415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930415 vs. ExPASy Swiss-Prot
Match: YGI3_SCHPO (Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe GN=SPBC2A9.03 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.084e-23
Identity = 64/186 (34.41%), Postives = 97/186 (52.15%), Query Frame = 2
Query:   26 FMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLYFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDRNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNR 583
            F+   ND  V   D++R      +     VN   L  +  L ++  D+ + +L+D ++      L  H       +WHP+G I ATG QD T +VWD+R L KS   L   + A+ ++ F+     +A+ E ADFV ++D K  F   Q IDFFGEI+G  +S   ++LFIGV D   G +L++ R
Sbjct:  233 FILGCNDGAVYVEDVQRTSPILVYRCSNAVNCVQLFDETPLALVCTDSKDAMLIDIRSNSVSAKL-PHSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQMSAVTNLCFSPLGESLAVTEQADFVQLFDTKL-FNTSQVIDFFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRR 416          
BLAST of FC930415 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 52/188 (27.66%), Postives = 88/188 (46.81%), Query Frame = 2
Query:    5 SPSGGIHFMASNNDCGVRDFDMERFQL----SKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLYFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDRNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 556
            SP G +     + DC VR ++++  +L      H ++   V     SPDG++L   G +    L   + G  I  L GH +  F+ A+HPDG   A+ + DKT ++WD+++    +  L G+   +R + F+ D N +A +     + ++D   G          G +  + FS D + L  G  DRT
Sbjct:  651 SPEGQL-LATCDTDCHVRVWEVKSGKLLLICRGHSNW---VRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQD-GTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRT 833          
BLAST of FC930415 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 42/148 (28.38%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  113 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLYFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDRNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 556
            VN ++ SPDG+ L+   D+    +  +++G+ +  L GH     +  + PDGR+ A+ + D + R+WDV   SK + VLKG+  ++ ++ F+ D   +A         V++ ++G      +     I    FSP +++L  G WD T
Sbjct:   29 VNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVAR-SKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDST 175          
The following BLAST results are available for this feature:
BLAST of FC930415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YGI3_SCHPO6.084e-2334.41Uncharacterized WD repeat-containing protein C2A9.... [more]
Y2800_ANASP2.169e-1227.66Uncharacterized WD repeat-containing protein alr28... [more]
WDR38_MOUSE3.699e-1228.38WD repeat-containing protein 38 OS=Mus musculus GN... [more]
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Properties
Property NameValue
Genbank descriptionC34007C11EF PostHarvC1 Citrus clementina cDNA clone C34007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930415 ID=FC930415; Name=FC930415; organism=Citrus clementina; type=EST; length=734bp
CAATTCTCCCAGTGGTGGAATTCATTTCATGGCGTCAAATAACGACTGTG
GAGTTAGGGACTTTGATATGGAGAGGTTTCAGCTCTCAAAGCATTTCAGC
TTCCCATGGCCTGTGAATCACACCTCTTTGAGTCCGGATGGAAAGCTTCT
TGTCATTGTTGGTGACAACCCAGAAGGGATACTGGTGGATTCTCAAACAG
GAAAGGCCATCATGCCGTTATGTGGGCACTTGTACTTCTCCTTTGCATCT
GCATGGCACCCTGATGGTCGCATCTTTGCCACTGGTAACCAAGACAAGAC
TTGTCGAGTATGGGATGTTAGGAACTTATCAAAGTCAGTTGCTGTGCTCA
AGGGCAATTTGGGAGCAATTCGATCAATTCGTTTCACGTCTGATAGGAAT
TTCATGGCAATGGCAGAGCCAGCAGATTTTGTGCATGTCTATGATGCGAA
GAATGGGTTTGAGAAAGAGCAGGAGATCGATTTTTTTGGGGAGATCTCCG
GTATGACTTTTAGCCCTGACACAGAAGCCCTCTTCATTGGAGTGTGGGAC
CGCACCTATGGAAGTCTCCTTCAATACAACAGATGCAGGAATTATACATA
TCTTGACACCCTTTTGTGAAATGATTGCTGCATACGTCCATGTCAGCTTT
TACCTACAATTTTTATATGTTAACATGGAATGTTAGAGGATGATGTGTCT
GACAATTGGTGTACATGAACTTTGGNTATGTTCA
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