FC930427

Overview
NameFC930427
Unique NameFC930427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15227 contig Ccv1_Contig15227:93..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.238e-87
Identity = 150/222 (67.57%), Postives = 176/222 (79.28%), Query Frame = 1
Query:   34 MACRLADSMFLFMGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699
            MAC LADS+ LF G +Q+P   + I    SPG+  L    L+ K  + +R  +       I AVA+PV P   +SA+ RKQ+AE YGFRQ+GEPL ++VT+KDVI+ LPK+VFEIDDVKAWKSVL+SV+SYALGL MISKAPWYLLPLAW WTGTA+TGFFVIGHDCAH+SFS NKL+EDIVGTLAF+PLIYPYEPWRFKH +HHAKTNML  DTAWHPVWK
Sbjct:    1 MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPVWK 222          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 8.838e-85
Identity = 157/226 (69.47%), Postives = 182/226 (80.53%), Query Frame = 1
Query:   34 MACRLADSMFLFMGPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            MA R+ADS+F F GP Q      K+   S   SPG+  +K   LL+KG  H+  RC  P  R    I+AVA PVAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+VFEIDD+KA KSVL+SV+SY LGL MI+K+PWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVGTLAFLPL+YPYEPWRFKH +HHAKTNML  DTAW PV
Sbjct:    1 MASRIADSLFAFTGPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPV 226          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.969e-84
Identity = 151/221 (68.33%), Postives = 179/221 (81.00%), Query Frame = 1
Query:   34 MACRLADSMFLFMGPHQ-RPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            MA R+ADS+F F GP Q  P   +      SPG+  ++   LL+KG +        +    I+AV VPVAPPS D+A+ R+Q+AESYGF+QIG+ LP+NVT+KD++D+LPK+VFEIDDVKAWKSVL+SV+SYALGL MI+KAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKL+EDIVGTLAFLPL+YPYEPWRFKH +HHAKTNML  DTAW PV
Sbjct:    1 MASRIADSLFAFTGPQQCLPRAPKLASARLSPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPV 221          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.742e-76
Identity = 134/202 (66.34%), Postives = 164/202 (81.19%), Query Frame = 1
Query:  118 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVAPPSE----DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699
            +S G+  +KW+   ++ + H R +   +GTR     +QAVAVPVA PS     D+ +  KQ+AE YGF+QIGEPLP++VTM+D+I SLPK+VFEI+D KAW +VL+SV+SYALG+ MI+KAPWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVGTLAF+PLIYPYEPWRFKH +HH KTNML  DTAW P+ K
Sbjct:   27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLKQLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMK 228          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.440e-34
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  325 NVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690
            ++ ++D+I +LPK+ FE    KAW SVL+++ + A+G L I   PWY LP+ W WTGTA+TG FV+GHDC H+SF+K + + D+VG +AF PLIYP+  WR  H  HH  TN +  D AW P
Sbjct:   23 DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDP 144          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 63/121 (52.07%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  337 KDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699
            +D+I++LP  VF  D  KAW +V+++V    LG L I+ APW+LLP+ W +TGTA+TGFFVIGHDC H+SFS+N  + D VG + FLP+IYP+  WR  H +HH  TN +  D AW P W+
Sbjct:   26 EDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQP-WR 145          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 44/130 (33.85%), Postives = 61/130 (46.92%), Query Frame = 1
Query:  307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSS-YALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            G P P N+   D+  ++PK  +  D  ++   V+  V + + L         W + PL WA  GT     FV+GHDC H SFS N  L  +VG L    ++ PY  WR  H  HH        D +WHP+
Sbjct:   99 GAPPPFNLA--DIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPL 226          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 54/176 (30.68%), Postives = 78/176 (44.32%), Query Frame = 1
Query:  196 SRGTRFIQAVAVPVAPPSEDSADCRKQ--------IAESYG-FRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSS-YALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            S+ + +   VAVPV   +    D R++        + E  G F   G P P   T+ D+  ++PK  +  +  ++   VL  V   + L  +      W   PL W   GT     FV+GHDC H SFS N  L  +VG L    ++ PY  WR  H  HH     +  D +WHP+
Sbjct:   59 SKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEFFDAGAPPP--FTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 232          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 44/133 (33.08%), Postives = 63/133 (47.37%), Query Frame = 1
Query:  307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            G P P N+   D+  ++PK  +  +    WKS+   V   A+   + + A     W + PL W   GT     FV+GHDC H SFS +  L  +VG L    ++ PY  WR  H  HH     +  D +WHP+
Sbjct:   49 GAPPPFNLA--DIRAAIPKHCWVKNP---WKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPM 176          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 44/133 (33.08%), Postives = 63/133 (47.37%), Query Frame = 1
Query:  307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            G P P N+   D+  ++PK  +  +    WKS+   V   A+   + + A     W + PL W   GT     FV+GHDC H SFS +  L  +VG L    ++ PY  WR  H  HH     +  D +WHP+
Sbjct:   91 GAPPPFNLA--DIRAAIPKHCWVKNP---WKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPM 218          
The following BLAST results are available for this feature:
BLAST of FC930427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FAD6C_SOYBN4.238e-8767.57Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_ARATH8.838e-8569.47Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_BRANA1.969e-8468.33Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_SPIOL5.742e-7666.34Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
DESA_SYNY32.440e-3450.00Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL1.211e-3352.07Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
FAD3C_SOYBN1.487e-1533.85Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_RICCO1.487e-1530.68Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_BRANA5.652e-1533.08Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH5.652e-1533.08Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC34007D11EF PostHarvC1 Citrus clementina cDNA clone C34007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930427 ID=FC930427; Name=FC930427; organism=Citrus clementina; type=EST; length=699bp
GGGAATTTCTGCATTTCTCTTGCTCAAAACATAATGGCTTGCAGACTTGC
AGATTCTATGTTCCTTTTCATGGGCCCCCATCAAAGGCCAACTGGGAGTC
AGAAAATTGGATGCTTTAGTTCACCTGGCCTTTGTCAGCTGAAGTGGGAG
AGTCTTCTTGTGAAGGGAGTTAAGCACAAAAGATGTTCAATTCCCTCTCG
AGGGACTAGATTTATACAGGCTGTGGCCGTTCCAGTTGCACCACCTTCAG
AAGACAGTGCGGATTGTAGAAAGCAGATAGCAGAAAGTTATGGGTTTAGG
CAAATCGGAGAGCCACTGCCTGAAAATGTGACAATGAAGGATGTCATTGA
TTCTCTCCCAAAAAAGGTATTTGAGATTGATGATGTGAAAGCATGGAAGT
CTGTTTTATTATCCGTCAGTTCATATGCGTTGGGGCTTCTCATGATCTCA
AAGGCCCCATGGTATTTGCTTCCTTTGGCTTGGGCATGGACAGGGACTGC
GGTCACAGGGTTCTTTGTTATAGGCCATGATTGTGCCCACAAATCATTTT
CGAAGAACAAGTTACTGGAAGACATCGTGGGAACCCTGGCCTTTCTGCCA
CTGATATACCCATATGAACCCTGGCGGTTTAAGCACGGCAAGCATCATGC
CAAAACAAACATGCTGAACGGAGATACAGCTTGGCATCCTGTTTGGAAG
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