FC930434

Overview
NameFC930434
Unique NameFC930434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14478 contig Ccv1_Contig14478:3..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.719e-75
Identity = 135/212 (63.68%), Postives = 165/212 (77.83%), Query Frame = 1
Query:   82 ATTAQENLPPPLDSKAELPPLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDIXCSRPKLAAWIEELNKL 711
            A++ +E LPP L S +E PPLFDGT RLY++Y CP+AQRAWI RNYKGLQDKIK+V ++L DRP WYKEKVYP NKVP+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++FA+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDI   RP L  +IEE+NK+
Sbjct:    9 ASSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKI 220          
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.719e-75
Identity = 135/212 (63.68%), Postives = 165/212 (77.83%), Query Frame = 1
Query:   82 ATTAQENLPPPLDSKAELPPLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDIXCSRPKLAAWIEELNKL 711
            A++ +E LPP L S +E PPLFDGT RLY++Y CP+AQRAWI RNYKGLQDKIK+V ++L DRP WYKEKVYP NKVP+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++FA+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDI   RP L  +IEE+NK+
Sbjct:    9 ASSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKI 220          
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.193e-68
Identity = 125/212 (58.96%), Postives = 160/212 (75.47%), Query Frame = 1
Query:   85 TTAQENLPPPLDSKAELPPLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDIXCSRPKLAAWIEELNKLD 714
            ++ +E LP  L S +E P LFDGT RLYI Y CPFAQRAWI RN+KGLQDKI+LV ++L+D+P WYKEKVY    VP+LEHNGK++GESLDLIKY+DS+FEGP+LLP+DPEKR+FADEL ++ + FT  +Y+    K D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER QI+ S   KY+I   RP L  +IEE+N+++
Sbjct:    9 SSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIE 220          
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.045e-64
Identity = 117/213 (54.93%), Postives = 156/213 (73.24%), Query Frame = 1
Query:   82 ATTAQENLPPPLDSKAELPPLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSFKGDPA--KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDIXCSRPKLAAWIEELNKLD 714
            +++ +E+LPP L S ++ PP+FDGT RLYI Y CPFAQRAW+TRN KGLQDK++LV ++L+D+P WYK+KVY    VP+LEH+ +V GESLDLI+Y+DSNF+GP+LLP+D  KR+FADELF+  + FT  +Y+      A   +   A D LE  L KFDDGPFFLGQFS  D+AY+  +ER QI+ S    YDI   RP L  +I+E+NK++
Sbjct:    8 SSSVKESLPPALGSTSQPPPVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKMELVAIDLQDKPAWYKDKVYAQGTVPSLEHDSEVRGESLDLIRYIDSNFDGPALLPEDAAKRQFADELFASANAFTKALYSPLLSHAAVSDEVVAALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIE 220          
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: GSTO1_HUMAN (Glutathione S-transferase omega-1 OS=Homo sapiens GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 57/198 (28.79%), Postives = 96/198 (48.48%), Query Frame = 1
Query:  139 PLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELFSHIDTFTND-VYTSFKGDPA---KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDIXCSRPKLAAWIEELNK 708
            P+ +G+ R+Y    CPFA+R  +    KG++ ++  + +NL+++P W+ +K  P   VP LE++ G++I ES    +Y+D  + G  LLPDDP ++   K   ELFS + +     + +  K D A   ++    F  LE+ L       F     S +D    P+ ER +     E         PKL  W+  + +
Sbjct:   18 PVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHEV--ININLKNKPEWFFKK-NPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMKLNE----CVDHTPKLKLWMAAMKE 208          
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 60/202 (29.70%), Postives = 96/202 (47.52%), Query Frame = 1
Query:  139 PLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEH-NGKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELFSHIDTFTNDVYTSFKGDPAKQAGPAF-DYLEKALDKFDDG------PFFLG-QFSQVDIAYIPFVERFQIFLSEEFKYDIXCSRPKLAAWIEELNK 708
            P+ +G  R+Y    CPFAQR  +    KG++ +I  + +NL+++P W+ EK  P   VP LE+  G +I ES+   +Y+D  +    L PDDP ++   K   ELFS + +    + TSF     K+  P   + L+K   K ++        FF G   S +D    P+ +R +     E         PKL  W+  + +
Sbjct:   18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEI--ININLKNKPEWFFEK-NPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPS----LVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLEALELNE----CIDHTPKLKLWMATMQE 208          
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 58/198 (29.29%), Postives = 92/198 (46.46%), Query Frame = 1
Query:  139 PLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELFSHID----TFTNDVYTSFKGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDIXCSRPKLAAWIEELNK 708
            P+ +G  R+Y    CPFAQR  +  N KG++ ++  + +NL+++P W+ +K  P   VP LE++ G++I ES    +Y+D  + G  LLPDDP ++   K   EL S +      F      +      ++    F  LE+ L K     F     S +D    P+ ER +     E         PKL  W+  + K
Sbjct:   18 PVPEGLIRVYSMRFCPFAQRTLLVLNAKGIRHQV--ININLKNKPEWFFQK-NPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLEALELNE----CIDHTPKLKLWMAAMMK 208          
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 60/201 (29.85%), Postives = 97/201 (48.26%), Query Frame = 1
Query:  139 PLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELFSHIDTFTNDVYTSFKGDPAKQAGPAF-DYLEKALDKFDDG----PFFLG--QFSQVDIAYIPFVERFQIFLSEEFKYDIXCSRPKLAAWIEELNK 708
            P+ +G  R+Y    CPFAQR  +    KG++ ++  + +NL+++P W+ EK  P+  VP LE++ G ++ ES+   +Y+D  +    L PDDP K+   K   E FS +      +  SF     K+  P   + LE    K ++G      FLG    S VD    P+ +R +     E K +     PKL  W+  + +
Sbjct:   18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEV--ININLKNKPEWFFEK-NPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVP----PLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKSFLGGDSPSMVDYLTWPWFQRLEAL---ELK-ECLAHTPKLKLWMAAMQQ 207          
BLAST of FC930434 vs. ExPASy Swiss-Prot
Match: GSTO1_CAEEL (Glutathione transferase omega-1 OS=Caenorhabditis elegans GN=gsto-1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 61/206 (29.61%), Postives = 94/206 (45.63%), Query Frame = 1
Query:  136 PPLFDGTPRLYISYSCPFAQRAWITRNYKGLQDKIKLVPLNLRDRPTWYKEKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDP----EKRKFADEL--FSHIDTFTNDVYTSFKGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDIXC-------SRPKLAAWIEELNKLD 714
            PPL  G+ R+Y    CP+A+RA +    KG++ ++  V LN+ D+  WY  K Y   K PA+EHNGKV+ ES  + +Y+D  F    +LP DP    +++  AD L   +H       V         KQ    F+ L++A +   +  +   Q    D    PF E+     S +   D+           PKL  W +++   D
Sbjct:   18 PPLSKGSFRVYNMRFCPWAERAMLYVAAKGIEAEV--VNLNVTDKLEWYWTKHYQ-GKAPAVEHNGKVVIESGFIPEYLDDAFPETRILPTDPYEKVQQKLLADRLTAVAHAVPLLFAVMRDRTLKDEKQR-KVFEVLKQAENLLANDFYAGSQPGYPDYLSFPFFEKIWWSASLDGVVDLPTIEFPGEEEYPKLTKWFQKMISSD 219          
The following BLAST results are available for this feature:
BLAST of FC930434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
IN21B_ORYSJ1.719e-7563.68Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI1.719e-7563.68Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ1.193e-6858.96Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE1.045e-6454.93Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
GSTO1_HUMAN1.213e-1228.79Glutathione S-transferase omega-1 OS=Homo sapiens ... [more]
GSTO1_RAT2.069e-1229.70Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG2.069e-1229.29Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]
GSTO1_MOUSE2.702e-1229.85Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
GSTO1_CAEEL1.341e-1129.61Glutathione transferase omega-1 OS=Caenorhabditis ... [more]
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Properties
Property NameValue
Genbank descriptionC34007E06EF PostHarvC1 Citrus clementina cDNA clone C34007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930434 ID=FC930434; Name=FC930434; organism=Citrus clementina; type=EST; length=716bp
GATTTCGGTATCAGGTAACTTTCTTCTTCAAAGCAAAAGAAAAGCTTTCA
GGAAACCTCTAGAGTCTTACCTTCCTCAATGGCAACCACAGCGCAAGAGA
ATCTCCCTCCACCGTTGGATTCGAAGGCCGAGCTACCACCTCTGTTCGAT
GGAACTCCCAGGTTGTACATTTCTTACTCGTGCCCATTTGCTCAGCGTGC
GTGGATCACCAGGAACTACAAGGGATTACAAGACAAGATTAAGTTAGTTC
CACTGAACCTCCGAGATAGGCCCACTTGGTACAAGGAGAAGGTTTATCCT
GTTAACAAGGTTCCAGCACTGGAGCACAATGGCAAAGTTATTGGAGAATC
TCTTGATTTGATTAAATATGTTGACAGCAATTTTGAAGGGCCTTCACTTT
TACCTGATGATCCTGAGAAACGAAAGTTTGCTGATGAACTGTTTTCCCAC
ATCGATACCTTCACCAACGATGTGTACACTTCATTCAAAGGAGACCCAGC
AAAACAAGCTGGTCCTGCTTTTGATTACTTAGAGAAGGCCCTTGATAAAT
TTGATGATGGCCCGTTCTTCCTTGGACAGTTCAGTCAGGTGGACATAGCC
TATATTCCATTTGTTGAGAGATTCCAGATCTTCTTATCAGAAGAATTTAA
GTATGACATCNACTGCAGCAGGCCTAAACTGGCAGCATGGATTGAGGAGT
TGAACAAGCTCGATGC
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