FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14298 contig Ccv1_Contig14298:267..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP4_ARATH (Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 5.962e-119
Identity = 210/244 (86.07%), Postives = 224/244 (91.80%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            GS+SLG YVISMASNASDVLAVELLQKDARLA++ E G+PCPGGTLRVVPLFETV DLR AG  IRKLLSIDWYR+HI KNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQE+VVAACNEFGIK+TLFH           PTYLAIQSQPPGSVMG+LRSTEQGEMVQAKFG+PQTAVRQLE+YTTAVLLAT++PPQPPREEKWRNLMEEIS ISCQ+YRSTVYENPEFL+YFHEATPQAELG
Sbjct:  603 GSESLGAYVISMASNASDVLAVELLQKDARLALTSEHGKPCPGGTLRVVPLFETVNDLRAAGPSIRKLLSIDWYREHIQKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQENVVAACNEFGIKITLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGSLRSTEQGEMVQAKFGIPQTAVRQLEVYTTAVLLATLKPPQPPREEKWRNLMEEISGISCQHYRSTVYENPEFLSYFHEATPQAELG 846          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP2_CHLRE (Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas reinhardtii GN=Ppc2 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.242e-76
Identity = 146/249 (58.63%), Postives = 177/249 (71.08%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGR-----PCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G D+LG YVISM   ASDV+AVELLQ++AR+ V  E G      P  GG+LRVVPLFET+ DL  A  V+ +LL+  WYR+H+   H   QEVM+GYSDSGKDAGR  A W LYK QE +VA      +K+TLFH           PT++AIQSQPPGSV GT R TEQGEMVQAKFG+   A+ QLE YTTAVLLATMRPP PPR E+WR +ME +S++SC++YR+ V+ +P FL YF  ATP+AELG
Sbjct:  785 GRDNLGAYVISMTKGASDVMAVELLQREARMQVGAEAGGRGGGGPEDGGSLRVVPLFETLEDLDAAEDVMTRLLTNPWYREHLRAVHGDAQEVMLGYSDSGKDAGRLAANWALYKCQERLVAITKANNVKLTLFHGRGGTVGRGGGPTHIAIQSQPPGSVEGTFRITEQGEMVQAKFGISGVALSQLETYTTAVLLATMRPPSPPRREEWRAVMEMLSRVSCESYRNIVHHSPLFLRYFKHATPEAELG 1033          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHEON (Phosphoenolpyruvate carboxylase OS=Shewanella oneidensis GN=ppc PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.676e-60
Identity = 129/241 (53.53%), Postives = 156/241 (64.73%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +LG YVISMAS  SDVL V LL K        E G   P   +RVVPLFET++DL  A   I  LL IDWYR +      G QEVM+GYSDS KDAG   AAW  Y+AQE +VA CN+ G+K+TLFH           P + AI SQPPGSV G +R TEQGEM++ KFGLP+ AV+ L +YT+AVL AT+ PP  P++E WRN ME I++ S   YR  V E P+F+AYF  ATP+ ELG
Sbjct:  467 ALGSYVISMASKPSDVLTVLLLLK--------ETGCTHP---MRVVPLFETLSDLNNAAACITDLLDIDWYRGYT----KGMQEVMIGYSDSAKDAGVMAAAWAQYRAQEQLVAVCNQAGVKLTLFHGRGGSIGRGGGPAHKAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLALYTSAVLEATLLPPPEPKQE-WRNCMERIAEESVSAYRGIVREEPDFVAYFRAATPEVELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP1_ARATH (Phosphoenolpyruvate carboxylase 1 OS=Arabidopsis thaliana GN=PPC1 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.001e-57
Identity = 115/243 (47.33%), Postives = 156/243 (64.20%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +DS G Y+ISMA+  SDVLAVELLQ++ R+              LRVVPLFE + DL  A   + +L S+DWY+  I    NG QEVM+GYSDSGKDAGR +AAW+LYKAQE++V    E+G+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   MRPP  P+ E WR L++E++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  522 ADSFGAYIISMATAPSDVLAVELLQRECRVKQP-----------LRVVPLFEKLADLEAAPAAVARLFSVDWYKNRI----NGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPE-WRALLDEMAVVATEEYRSVVFQEPRFVEYFRLATPELEYG 748          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP2_SORBI (Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicolor PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.708e-57
Identity = 113/243 (46.50%), Postives = 156/243 (64.20%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +D+ G Y+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWYR+ I    NG QEVM+GYSDSGKDAGR +AAW+LYKAQE+++    +FG+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG    + R L+ +T A L   M PP  P+ E WR L++E++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  515 ADNFGAYIISMATAPSDVLAVELLQRECHVKTP-----------LRVVPLFEKLADLEAAPAALARLFSIDWYRQRI----NGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELIKVAKDFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLSFRTLQRFTAATLEHGMHPPNAPKPE-WRTLLDEMAVVATEEYRSIVFQEPRFVEYFRLATPETEYG 741          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_MEDSA (Phosphoenolpyruvate carboxylase OS=Medicago sativa GN=PEPC PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.230e-57
Identity = 116/243 (47.74%), Postives = 156/243 (64.20%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD+ G Y+ISMA+  SDVLAVELLQ++ ++              LRVVPLFE + DL  A   + +L SIDWY   I    +G QEVM+GYSDSGKDAGRF+AAW+LYKAQED++    +FG+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   MRPP  P+ E WR LM++++ I+ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  521 SDNFGAYIISMATAPSDVLAVELLQRECKVR-----------NPLRVVPLFEKLDDLESAPAALARLFSIDWYINRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDLIKVAQKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPSSPKPE-WRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPEMEYG 747          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP2_MAIZE (Phosphoenolpyruvate carboxylase 2 OS=Zea mays GN=PEP4 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.230e-57
Identity = 114/243 (46.91%), Postives = 155/243 (63.79%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD+ G Y+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWYR+ I    NG QEVM+GYSDSGKDAGR +AAW+LYKAQE+++    +FG+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR L++E++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  522 SDNFGAYIISMATAPSDVLAVELLQRECHVKTP-----------LRVVPLFEKLADLEAAPAALARLFSIDWYRQRI----NGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELIKVAKDFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPNAPKPE-WRALLDEMAVVATEEYRSIVFKEPRFVEYFRLATPETEYG 748          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PEA (Phosphoenolpyruvate carboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.913e-57
Identity = 115/243 (47.33%), Postives = 156/243 (64.20%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD+ G Y+ISMA+  SDVLAVELLQ++ ++              LRVVPLFE + DL  A   + +L SIDWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++    +F +K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   MRPP  P+ E WR LM++++ I+ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  521 SDNFGAYIISMATAPSDVLAVELLQRECKIK-----------NPLRVVPLFEKLADLEAAPAALARLFSIDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELINVAQKFSVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPSSPKPE-WRALMDQMAIIATEEYRSIVFKEPRFVEYFRLATPEMEYG 747          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP2_MESCR (Phosphoenolpyruvate carboxylase 2 OS=Mesembryanthemum crystallinum GN=PPC2 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57
Identity = 117/243 (48.15%), Postives = 154/243 (63.37%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD  G Y+ISMA++ SDVLAVELLQ++ R+              LRVVPLFE + DL  A   + +L SIDWY+  I    NG QEVM+GYSDSGKDAGR +AAW LYKAQE++V    E+G+K+T+FH           PT+LAI SQPP +V G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR L++EI+ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  513 SDCFGAYIISMATSPSDVLAVELLQRECRVKQP-----------LRVVPLFEKLADLEAAPAAVARLFSIDWYKNRI----NGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVQVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETVNGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPISPKPE-WRALLDEIAVVATEKYRSIVFKEPRFVEYFRLATPELEYG 739          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSE14 (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ppc PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.969e-57
Identity = 123/241 (51.04%), Postives = 154/241 (63.90%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA +ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG VI KLL +  YR  +    +G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++      YR+ V ENPEF+ YF +ATP+ ELG
Sbjct:  467 SLGSYVISMAGSASDVLAVQLLLKEAGLQ------RP-----MRVVPLFETLADLDNAGPVIEKLLGLPGYRSRL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEKLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPP-QPSWRTMMDQMAADGVGAYRAVVRENPEFVEYFRQATPEQELG 691          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP4_ARATH5.962e-11986.07Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis t... [more]
CAPP2_CHLRE6.242e-7658.63Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas... [more]
CAPP_SHEON3.676e-6053.53Phosphoenolpyruvate carboxylase OS=Shewanella onei... [more]
CAPP1_ARATH1.001e-5747.33Phosphoenolpyruvate carboxylase 1 OS=Arabidopsis t... [more]
CAPP2_SORBI1.708e-5746.50Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicol... [more]
CAPP_MEDSA2.230e-5747.74Phosphoenolpyruvate carboxylase OS=Medicago sativa... [more]
CAPP2_MAIZE2.230e-5746.91Phosphoenolpyruvate carboxylase 2 OS=Zea mays GN=P... [more]
CAPP_PEA2.913e-5747.33Phosphoenolpyruvate carboxylase OS=Pisum sativum P... [more]
CAPP2_MESCR3.804e-5748.15Phosphoenolpyruvate carboxylase 2 OS=Mesembryanthe... [more]
CAPP_PSE144.969e-5751.04Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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