FC930476

Overview
NameFC930476
Unique NameFC930476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.480e-97
Identity = 172/232 (74.14%), Postives = 191/232 (82.33%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI PE MDTVER+TKAHY+KCMEQRFKELVAS+ALEGIQ EV DMDWEST+++RHLPQS I+EVPDLDEEYR+VM                          GYLKK F+G  GP FGTKV+NYPPCPK DLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP++HSIV+NLGDQ+EVITNGKYKSV HRV++QTDG  R S+ASFYNPG+DAVIYPAPAL+
Sbjct:   36 LVNHGIPPELMDTVERVTKAHYKKCMEQRFKELVASKALEGIQAEVTDMDWESTYFLRHLPQSNISEVPDLDEEYRRVMKDFAERLEKLAEYLLDLLCENLGLEKGYLKKAFYGTKGPNFGTKVANYPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVVAQTDGT-RMSIASFYNPGNDAVIYPAPALV 266          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 9.981e-97
Identity = 169/232 (72.84%), Postives = 192/232 (82.76%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LV+HGI  EF+DTVERLTK HYR+C+EQRFKELVAS+ LE ++TEVNDMDWESTFY+RHLP+S I+EVPDL+++YR VM                          GYLKK F+G NGPTFGTKVSNYPPCP P+LIKGLRAHTDAGG+ILLFQDDKVSGLQLLKDGQWIDVPP+RHSIV+NLGDQ+EVITNGKY+SVEHRVI+QTDG  R S+ASFYNPGSDAVIYPAP L+
Sbjct:   36 LVSHGIPTEFLDTVERLTKEHYRQCLEQRFKELVASKGLEAVKTEVNDMDWESTFYLRHLPKSNISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGT-RMSIASFYNPGSDAVIYPAPTLV 266          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.224e-96
Identity = 173/232 (74.57%), Postives = 189/232 (81.47%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI  E MDTVE++TK HY+KCMEQRFKELVAS+ALEG+Q EV DMDWESTF+++HLP S I+EVPDLDEEYR+VM                          GYLK  F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+Q DG  R SLASFYNPGSDAVIYPAPAL+
Sbjct:   36 LVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDG-ARMSLASFYNPGSDAVIYPAPALV 266          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.449e-96
Identity = 172/232 (74.14%), Postives = 188/232 (81.03%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI  E MDTVE+LTK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I+EVPDLD+EYR+VM                          GYLKK F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  R SLASFYNPGSDAVIYPAP L+
Sbjct:   36 LVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGT-RMSLASFYNPGSDAVIYPAPTLV 266          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.081e-94
Identity = 169/232 (72.84%), Postives = 187/232 (80.60%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI  E MDTVE+LTK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I++VPDLDEEYR+VM                          GYLK  F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  R SLASFYNPG+DAVIYPAP+L+
Sbjct:   36 LVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGT-RMSLASFYNPGNDAVIYPAPSLI 266          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.081e-94
Identity = 169/232 (72.84%), Postives = 186/232 (80.17%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI  E MDTVE+ TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I+EVPDLD+EYR+VM                          GYLKK F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP+RHSIV+NLGDQ+EVITNGKYKSV HRVI+QTDG  R SLASFYNP SDAVIYPAPAL+
Sbjct:   36 LVNHGIPHEVMDTVEKFTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVPHRVIAQTDGT-RMSLASFYNPASDAVIYPAPALV 266          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 7.908e-94
Identity = 162/232 (69.83%), Postives = 187/232 (80.60%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI  EF+D VE++T+ HY+KCME+RFKE V S+ LE  Q EVNDMDWESTF++RHLP+S I+++ DLDEEY+K+M                          GYLKK F+G+ GPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG WIDVPP+RH+IVVNLGDQ+EVITNG+YKSV HRV++QT G GR S+ASFYNPGSDAVIYPAPAL+
Sbjct:   36 LVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSKGLEAAQAEVNDMDWESTFFLRHLPESNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMRHAIVVNLGDQLEVITNGRYKSVMHRVLTQTSGTGRMSIASFYNPGSDAVIYPAPALV 267          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 3.005e-93
Identity = 168/232 (72.41%), Postives = 185/232 (79.74%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI  E MDTVE++TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I++VPDLDEEYR+VM                          GYLK  F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  R SLASFYNPGSDAVIYPA  L+
Sbjct:   36 LVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGT-RMSLASFYNPGSDAVIYPAKTLV 266          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.491e-92
Identity = 166/232 (71.55%), Postives = 186/232 (80.17%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI  E MDTVE++TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I EVPDLD++YR+VM                          GYLKK+F+G  GP FG+KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKV+GLQLLKDGQWIDVPP+R SIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  R SLASFYNPGSDAVI+PAP L+
Sbjct:   36 LVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNICEVPDLDDQYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKIFYGTKGPNFGSKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGQWIDVPPMRLSIVVNLGDQLEVITNGKYKSVMHRVITQTDGT-RMSLASFYNPGSDAVIFPAPTLV 266          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.323e-92
Identity = 159/232 (68.53%), Postives = 189/232 (81.47%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI  E MDTVERLTK HY KCMEQRFKE+VA++ LE +Q+E+ND+DWESTF++RHLP S I+E+PDL++++RK M                          GYLKK F+G+ GPTFGTKVSNYPPCP+P+LIKGLRAHTDAGGIILLFQD+KVSGLQLLKDG+WIDVPP++HSIV+N+GDQ+EVITNGKYKSV HRVI+Q DG  R S+ASFYNPGSDAV+YPAPAL+
Sbjct:   36 LVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVATKGLEAVQSEINDLDWESTFFLRHLPVSNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDG-NRMSIASFYNPGSDAVMYPAPALV 266          
The following BLAST results are available for this feature:
BLAST of FC930476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO_DIOKA4.480e-9774.141-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO_PRUMU9.981e-9772.841-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO1_PETHY2.224e-9674.571-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO3_PETHY8.449e-9674.141-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO4_SOLLC2.081e-9472.841-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO4_PETHY2.081e-9472.841-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCO1_CUCME7.908e-9469.831-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO1_SOLLC3.005e-9372.411-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO_TOBAC1.491e-9271.551-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
ACCO_ACTDE3.323e-9268.531-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008A01EF PostHarvC1 Citrus clementina cDNA clone C34008A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930476 ID=FC930476; Name=FC930476; organism=Citrus clementina; type=EST; length=698bp
AGCTGGTGAATCATGGAATTCAGCCGGAGTTTATGGACACAGTGGAGAGA
TTGACCAAGGCGCATTACAGAAAATGTATGGAGCAAAGATTCAAGGAGCT
TGTTGCAAGCAGGGCACTTGAAGGTATCCAAACCGAGGTCAATGACATGG
ACTGGGAAAGCACTTTCTATGTGCGTCACCTCCCTCAGTCGACCATCAAT
GAAGTCCCAGATCTTGATGAGGAATACAGGAAGGTGATGAAGGAATTTGC
ATTGAAATTGGAGAAATTAGCAGAGGAGCTATTGGACTTGTTATGCGAGA
ATCTTGGATTAGAGAAGGGGTACTTGAAAAAGGTCTTTCATGGGGCAAAC
GGACCAACCTTTGGTACCAAAGTTAGCAACTACCCACCATGCCCCAAGCC
AGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCATCATCT
TGCTCTTCCAGGATGACAAAGTCAGTGGCCTTCAGCTTCTTAAAGATGGC
CAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAACCTCGG
TGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGAGCACA
GAGTGATTTCTCAAACCGACGGCGAGGGCCGGACGTCCCTAGCTTCATTC
TACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTGCTT
back to top