FC930477

Overview
NameFC930477
Unique NameFC930477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM3_ARATH (Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 8.065e-83
Identity = 153/195 (78.46%), Postives = 168/195 (86.15%), Query Frame = 1
Query:  118 EQDHLLPLLADDREERAYDPTEKVVVIXXXXXXXXNLST----APPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVFAV 690
            E +  L +  ++ EE AYD TEKV ++                APPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQ+GA+AGYSLLWLL+WATA+GLLVQLLSARLGVATGRHLAELCR+EYP+WARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLW+GVVITALDCF+FLFLENYG+RKL AVFAV
Sbjct:    5 ENNEPLLINEEEEEETAYDETEKVHIVRNEEEDDLEHGVGCGGAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCRDEYPTWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWAGVVITALDCFVFLFLENYGIRKLEAVFAV 199          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM4_ARATH (Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.521e-81
Identity = 149/195 (76.41%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  118 EQDHLLPLLADDREERAYDPTEKVVVIXXXXXXXXNLS----TAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVFAV 690
            E D   PLLA   EERAY+ TEKV+++        +       +P FSWKKLWLFTGPGFLMSIAFLDPGNLE DLQ+GAIAGYSL+WLL+WATA+GLL+QLLSARLGVATGRHLAELCREEYP+WARMVLW+MAE+ALIG+DIQEVIGSAIAIKILSNG++PLW+GVVITALDCFIFLFLENYG+RKL AVFA+
Sbjct:    3 ETDRERPLLAS--EERAYEETEKVLIVGIDEEEDADYDDDPGNSPKFSWKKLWLFTGPGFLMSIAFLDPGNLESDLQAGAIAGYSLIWLLMWATAIGLLIQLLSARLGVATGRHLAELCREEYPTWARMVLWIMAEIALIGADIQEVIGSAIAIKILSNGLVPLWAGVVITALDCFIFLFLENYGIRKLEAVFAI 195          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM2_ARATH (Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.981e-78
Identity = 144/202 (71.29%), Postives = 165/202 (81.68%), Query Frame = 1
Query:  112 EQEQDHLLPL--------LADDREERAYDPTEKVVVIXXXXXXXXNLS-TAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVFAV 690
            E+E+D LLP           D   E A++  EK++++            T PPFSW+KLWLFTGPGFLMSIAFLDPGNLEGDLQ+GAIAGYSLLWLL+WATA+GLL+Q+LSAR+GVATGRHLAELCR+EYP+WAR VLW MAELALIG+DIQEVIGSAIAI+ILS G LPLW+GVVITA DCF+FLFLENYGVRKL AVFAV
Sbjct:   10 EEEEDRLLPPPPPSQSLPSTDSESEAAFETNEKILIVDFESPDDPTTGDTPPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQMLSARVGVATGRHLAELCRDEYPTWARYVLWSMAELALIGADIQEVIGSAIAIQILSRGFLPLWAGVVITASDCFLFLFLENYGVRKLEAVFAV 211          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM5_ARATH (Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.750e-67
Identity = 118/187 (63.10%), Postives = 148/187 (79.14%), Query Frame = 1
Query:  130 LLPLLADDREERAYDPTEKVVVIXXXXXXXXNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVFAV 690
            L+P  +   E+  ++   +  ++           + PPFSW KLW FTGPGFLMSIAFLDPGN+EGDLQ+GA+AGYSLLWLLLWAT +GLL+QLLSAR+GVATGRHLAE+CR EYPSWAR++LW MAE+ALIG+DIQEVIGSAIA++IL+ G LP+W GV+IT+ DCF+  +LE  G+RKL  +FAV
Sbjct:   27 LVPETSQPEEDELHESPPENQILNVEEDRDKTYDSVPPFSWAKLWKFTGPGFLMSIAFLDPGNIEGDLQAGAVAGYSLLWLLLWATLMGLLMQLLSARIGVATGRHLAEICRSEYPSWARILLWFMAEVALIGADIQEVIGSAIALQILTRGFLPIWVGVIITSFDCFLISYLEKCGMRKLEGLFAV 213          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM1_DICDI (Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.098e-55
Identity = 98/146 (67.12%), Postives = 124/146 (84.93%), Query Frame = 1
Query:  247 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVF 684
            ++K LW FTGPGFLMSIA+LDPGNLE D+Q+GA+AGY LLW+L W+T +G  +Q+L++RLGV TG+HLAE CRE+YP   R++LW+M ELA+IGSDIQEVIG+AIA++ILSNG +PLW+GV+ TA D F FLFLE YG+RKL A F
Sbjct:   70 NFKTLWAFTGPGFLMSIAYLDPGNLESDIQAGAMAGYQLLWVLFWSTVIGFWLQMLASRLGVVTGKHLAEHCREQYPKTPRLLLWLMTELAIIGSDIQEVIGTAIALQILSNGHIPLWAGVLFTAADTFTFLFLEKYGIRKLEAFF 215          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM2_HUMAN (Natural resistance-associated macrophage protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.448e-55
Identity = 101/147 (68.71%), Postives = 123/147 (83.67%), Query Frame = 1
Query:  244 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVF 684
            FS++KLW FTGPGFLMSIA+LDPGN+E DLQSGA+AG+ LLW+LL AT VGLL+Q L+ARLGV TG HLAE+C  +YP   R++LW+M ELA+IGSD+QEVIGSAIAI +LS G +PLW GV+IT  D F+FLFL+ YG+RKL A F
Sbjct:   65 FSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFF 211          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM2_MOUSE (Natural resistance-associated macrophage protein 2 OS=Mus musculus GN=Slc11a2 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.115e-55
Identity = 101/147 (68.71%), Postives = 123/147 (83.67%), Query Frame = 1
Query:  244 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVF 684
            FS++KLW FTGPGFLMSIA+LDPGN+E DLQSGA+AG+ LLW+LL AT VGLL+Q L+ARLGV TG HLAE+C  +YP   R++LW+M ELA+IGSD+QEVIGSAIAI +LS G +PLW GV+IT  D F+FLFL+ YG+RKL A F
Sbjct:   65 FSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGSAIAINLLSAGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAFF 211          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM2_RAT (Natural resistance-associated macrophage protein 2 OS=Rattus norvegicus GN=Slc11a2 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.866e-54
Identity = 100/147 (68.03%), Postives = 123/147 (83.67%), Query Frame = 1
Query:  244 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVF 684
            FS++KLW FTGPGFLMSIA+LDPGN+E DLQSGA+AG+ LLW+LL AT VGLL+Q L+ARLGV TG HLAE+C  +YP   R++LW+M ELA+IGSD+QEVIGSAIAI +LS G +PL+ GV+IT  D F+FLFL+ YG+RKL A F
Sbjct:   65 FSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGSAIAINLLSAGRVPLYGGVLITIADTFVFLFLDKYGLRKLEAFF 211          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: MVL_DROME (Protein Malvolio OS=Drosophila melanogaster GN=Mvl PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.752e-53
Identity = 102/175 (58.29%), Postives = 133/175 (76.00%), Query Frame = 1
Query:  160 ERAYDPTEKVVVIXXXXXXXXNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVF 684
            ++AY   EKV++         + ST   FS++KLW FTGPGFLMSIA+LDPGN+E D+QSGA A Y +LW+LLWAT +GLL+Q L+ARLGV TG HLAE+C  +Y    R +LW+M E+A+IGSD+QEVIG+AIAI +LSN ++PLW GV+IT +D F FLFL+ YG+RKL  +F
Sbjct:   51 KQAYFSDEKVLI-------PDDDSTNVGFSFRKLWAFTGPGFLMSIAYLDPGNIESDMQSGAAAKYKILWVLLWATVLGLLMQRLAARLGVVTGLHLAEMCYRQYKRLPRWILWIMIEIAIIGSDMQEVIGTAIAIYLLSNKVVPLWGGVLITIVDTFTFLFLDKYGLRKLEFLF 218          
BLAST of FC930477 vs. ExPASy Swiss-Prot
Match: NRAM1_HUMAN (Natural resistance-associated macrophage protein 1 OS=Homo sapiens GN=SLC11A1 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.136e-52
Identity = 97/149 (65.10%), Postives = 119/149 (79.87%), Query Frame = 1
Query:  244 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLAAVFAV 690
            FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+LLWAT +GLL Q L+ARLGV TG+ L E+C   YP   R VLW+  ELA++GSD+QEVIG+AIA  +LS G +PLW GV+IT +D F FLFL+NYG+RKL A F +
Sbjct:   53 FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRTVLWLTIELAIVGSDMQEVIGTAIAFNLLSAGRIPLWGGVLITIVDTFFFLFLDNYGLRKLEAFFGL 201          
The following BLAST results are available for this feature:
BLAST of FC930477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
NRAM3_ARATH8.065e-8378.46Metal transporter Nramp3 OS=Arabidopsis thaliana G... [more]
NRAM4_ARATH1.521e-8176.41Metal transporter Nramp4 OS=Arabidopsis thaliana G... [more]
NRAM2_ARATH5.981e-7871.29Metal transporter Nramp2 OS=Arabidopsis thaliana G... [more]
NRAM5_ARATH4.750e-6763.10Metal transporter Nramp5 OS=Arabidopsis thaliana G... [more]
NRAM1_DICDI1.098e-5567.12Metal transporter nramp1 homolog OS=Dictyostelium ... [more]
NRAM2_HUMAN5.448e-5568.71Natural resistance-associated macrophage protein 2... [more]
NRAM2_MOUSE7.115e-5568.71Natural resistance-associated macrophage protein 2... [more]
NRAM2_RAT7.866e-5468.03Natural resistance-associated macrophage protein 2... [more]
MVL_DROME1.752e-5358.29Protein Malvolio OS=Drosophila melanogaster GN=Mvl... [more]
NRAM1_HUMAN1.136e-5265.10Natural resistance-associated macrophage protein 1... [more]

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Properties
Property NameValue
Genbank descriptionC34008A02EF PostHarvC1 Citrus clementina cDNA clone C34008A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930477 ID=FC930477; Name=FC930477; organism=Citrus clementina; type=EST; length=692bp
GATTTTACAGTTGCTTCGCCTTAAGCTCTTTAGAAACCGATAAAACCAGA
CGGAAAAGCAAAGAAGACTCCCTTTGTTTATTGATTTACAGCCATGCCAC
CGCAGCAGCACGAGCAGGAACAAGACCATCTTCTACCGCTGTTAGCAGAC
GACAGGGAAGAAAGAGCGTACGACCCAACCGAAAAAGTCGTTGTAATCGG
ACTCGACGACGGGGACCTCGACAACTTGTCCACAGCGCCACCGTTTTCAT
GGAAGAAGCTCTGGCTGTTTACGGGTCCAGGATTCTTAATGAGCATCGCA
TTTCTGGATCCGGGGAACTTGGAGGGGGATCTGCAGTCAGGGGCGATTGC
GGGGTACTCGCTGTTGTGGCTGCTGTTGTGGGCTACGGCTGTAGGATTGC
TGGTTCAGCTCTTGTCGGCTCGGCTGGGCGTGGCGACTGGGCGCCATTTG
GCTGAGCTGTGTCGTGAGGAGTACCCCTCGTGGGCCCGCATGGTGCTGTG
GGTCATGGCTGAGCTGGCGCTCATTGGGTCTGATATTCAGGAGGTTATCG
GGAGTGCTATTGCGATTAAGATTTTGAGTAATGGGATTTTGCCCCTTTGG
TCTGGTGTTGTTATTACTGCTCTCGATTGTTTTATCTTTCTATTTCTTGA
GAACTATGGTGTCAGAAAATTGGCAGCTGTTTTTGCAGTTCT
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