FC930478

Overview
NameFC930478
Unique NameFC930478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 7.104e-116
Identity = 203/226 (89.82%), Postives = 216/226 (95.58%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            GEAP+KFK+AVEAVK LR++P ANDQYLPPFV+VDE+GKAVGPIVDGDAVVT NFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLP+ YLVSPPEI+RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYF   +EEYVEIPSDSGITFNVQPKMKALEIAE+A+ AILS +F QVRVNLPNSDMVGHTGDIEATVVACKAADEAVK+II
Sbjct:  231 GEAPYKFKNAVEAVKTLRQEPKANDQYLPPFVVVDESGKAVGPIVDGDAVVTLNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPNRYLVSPPEIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFKPEMEEYVEIPSDSGITFNVQPKMKALEIAEKARDAILSGKFDQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKMII 456          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 410.994 bits (1055), Expect = 2.985e-114
Identity = 198/226 (87.61%), Postives = 212/226 (93.81%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            GEAP+KFKSAVEA+KKLRE+P ANDQYLPPFVIVDENGK VGPIVDGDAVVT NFRADRMVMLAKALEYE+FD FDRVRFPKI YAGMLQYDGELKLPSHYLVSPPEI+RTSGEYLVHNGV TFACSETVKFGHVTFFWNGNRSGYF+  +EEYVEIPSD GITFNVQPKMKA+EIAE+A+ AILS +F QVRVN+PN DMVGHTGD+EATVV CKAADEAVK+II
Sbjct:  228 GEAPYKFKSAVEAIKKLREEPKANDQYLPPFVIVDENGKPVGPIVDGDAVVTINFRADRMVMLAKALEYENFDTFDRVRFPKIHYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVHNGVHTFACSETVKFGHVTFFWNGNRSGYFNPEMEEYVEIPSDVGITFNVQPKMKAIEIAEKARDAILSGKFQQVRVNIPNGDMVGHTGDVEATVVGCKAADEAVKMII 453          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.649e-114
Identity = 198/226 (87.61%), Postives = 212/226 (93.81%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            GEAPHKFK+AVEA+K LR++PN +DQYLPPFVIVDENGK VGPIVDGDAVVTFNFRADRMVM+AKALEY DFDKFDRVRFPKIRYAGMLQYDGELKLPS YLV PPEIDRTSGEYL +NGVRTFACSETVKFGHVTFFWNGNRSGYF+  +EEYVEIPSDSGITFNVQPKMKA+EIAE+ + AILS++F QVRVNLPNSDMVGHT  IEATVVACKAADEAVKIII
Sbjct:  160 GEAPHKFKNAVEAIKTLRQEPNTSDQYLPPFVIVDENGKPVGPIVDGDAVVTFNFRADRMVMIAKALEYADFDKFDRVRFPKIRYAGMLQYDGELKLPSKYLVEPPEIDRTSGEYLTYNGVRTFACSETVKFGHVTFFWNGNRSGYFNPQMEEYVEIPSDSGITFNVQPKMKAVEIAEKGRGAILSKKFEQVRVNLPNSDMVGHTSSIEATVVACKAADEAVKIII 385          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 406.371 bits (1043), Expect = 7.351e-113
Identity = 198/225 (88.00%), Postives = 211/225 (93.78%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKII 675
            GEAPHKFK+AVEAVK LR++P ANDQYLPPFVIVDE+GKAVGPIVDGDAVVTFNFRADRMVM AKALEYEDFDKFDRVR+PKIRYAGMLQYDGELKLPS YLVSPPEIDRTSGEYL HNGV TFACSETVKFGHVTFFWNGNRSGYF+  LEEYVEIPSDSGI+FNVQPKMKALEI E+A+ AILS +F QVRVN+PN DMVGHTGDIEATVVAC+AAD AVK+I
Sbjct:  230 GEAPHKFKNAVEAVKTLRKEPGANDQYLPPFVIVDESGKAVGPIVDGDAVVTFNFRADRMVMHAKALEYEDFDKFDRVRYPKIRYAGMLQYDGELKLPSRYLVSPPEIDRTSGEYLTHNGVSTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGISFNVQPKMKALEIGEKARDAILSGKFDQVRVNIPNGDMVGHTGDIEATVVACEAADLAVKMI 454          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 8.986e-111
Identity = 194/226 (85.84%), Postives = 208/226 (92.04%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            GEAP+KFKSA+EAVK LR QP ANDQYLPPFVIVD++G AVGP++DGDAVVT NFRADRMVMLAKALEY DFD FDRVR PKIRYAGMLQYDGELKLPS YLVSPPEIDRTSGEYLV NG+RTFACSETVKFGHVTFFWNGNRSGYFD+  EEYVE+PSDSGITFNV P MKALEIAE+A+ A+LS +F QVRVNLPN DMVGHTGDIEATVVACKAADEAVKII+
Sbjct:  231 GEAPYKFKSALEAVKTLRAQPKANDQYLPPFVIVDDSGNAVGPVLDGDAVVTINFRADRMVMLAKALEYADFDNFDRVRVPKIRYAGMLQYDGELKLPSRYLVSPPEIDRTSGEYLVKNGIRTFACSETVKFGHVTFFWNGNRSGYFDATKEEYVEVPSDSGITFNVAPNMKALEIAEKARDALLSGKFDQVRVNLPNGDMVGHTGDIEATVVACKAADEAVKIIL 456          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 8.986e-111
Identity = 196/226 (86.73%), Postives = 208/226 (92.04%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            GEAPHKFKSA+EAVK LR +P ANDQYLP FVIVD+NGKAVGPIVDGDAVVTFNFRADRMVM AKALEY+DFDKFDRVR P IRYAGMLQYDGELKLPS YLVSPP IDRTSGEYL HNGVRTFACSETVKFGHVTFFWNGNRSGYF+  LEEYVEIPSDSGI+FNVQPKMKALEIAE+A+ AILS +F QVRVNLPN DMVGHTGDIEATVVAC+AAD AV+ I+
Sbjct:  232 GEAPHKFKSALEAVKTLRAEPGANDQYLPSFVIVDDNGKAVGPIVDGDAVVTFNFRADRMVMHAKALEYKDFDKFDRVRVPDIRYAGMLQYDGELKLPSRYLVSPPLIDRTSGEYLAHNGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGISFNVQPKMKALEIAEKARDAILSGKFDQVRVNLPNGDMVGHTGDIEATVVACEAADRAVRTIL 457          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 6.440e-109
Identity = 192/226 (84.96%), Postives = 207/226 (91.59%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            GEAPHKFK  VEAVKKLR++PNANDQYL PFVIVD+NGK V  I+DGDAVVTFNFRADRMVMLAKALEYE+FDKFDRVR PKIRYAGMLQY GEL+LPSHYLVSPPEI R SGEYLV NGVRTFACSETVKFGHVTFFWNGNRSGYF+  LEEYVEIPSDSGITFNV+PKMKALEIAER + AILS +F QVRVNLPN DMVGHTGDI+AT+ ACK+ADEAVK+I+
Sbjct:  231 GEAPHKFKDPVEAVKKLRQEPNANDQYLAPFVIVDDNGKPVAAILDGDAVVTFNFRADRMVMLAKALEYENFDKFDRVRVPKIRYAGMLQYHGELQLPSHYLVSPPEIARHSGEYLVRNGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGITFNVKPKMKALEIAERTRDAILSGKFDQVRVNLPNGDMVGHTGDIKATIEACKSADEAVKMIL 456          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.354e-57
Identity = 118/218 (54.13%), Postives = 147/218 (67.43%), Query Frame = 1
Query:   19 FKSAVEAVKKLR-EQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVK 669
            F SA EA++  R E P   DQYLP FVI D NGK VG I DGD+VV  NFR DR + ++ A   ++FDKFDR   P + YAG++QYDG+LKLP  +LV+PP IDRT GEY+  + +  +A SET K+GHVT+FWNGN+SGYFD N EEY EI SD  I F+  P+MKAL I E  +KA+   +    RVN  N DMVGHTG+  ATV A +  D  V+
Sbjct:  234 FSSAKEAIETFRSENPKIIDQYLPSFVISD-NGKPVGKIQDGDSVVFTNFRGDRAIEISLAFTEKNFDKFDRGPLPNVLYAGIMQYDGDLKLPERFLVAPPAIDRTLGEYMASSNIPQYALSETQKYGHVTYFWNGNKSGYFDQNSEEYREILSDV-IPFDQSPEMKALLITEALEKALNENKQDFYRVNYANGDMVGHTGNYLATVQAMEFLDGCVE 449          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.354e-57
Identity = 118/218 (54.13%), Postives = 147/218 (67.43%), Query Frame = 1
Query:   19 FKSAVEAVKKLR-EQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVK 669
            F SA EA++  R E P   DQYLP FVI D NGK VG I DGD+VV  NFR DR + ++ A   ++FDKFDR   P + YAG++QYDG+LKLP  +LV+PP IDRT GEY+  + +  +A SET K+GHVT+FWNGN+SGYFD N EEY EI SD  I F+  P+MKAL I E  +KA+   +    RVN  N DMVGHTG+  ATV A +  D  V+
Sbjct:  234 FSSAKEAIETFRSENPKIIDQYLPSFVISD-NGKPVGKIQDGDSVVFTNFRGDRAIEISLAFTEKNFDKFDRGPLPNVLYAGIMQYDGDLKLPERFLVAPPAIDRTLGEYMASSNIPQYALSETQKYGHVTYFWNGNKSGYFDQNSEEYREILSDV-IPFDQSPEMKALLITEALEKALNENKQDFYRVNYANGDMVGHTGNYLATVQAMEFLDGCVE 449          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_METBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanococcoides burtonii (strain DSM 6242) GN=gpmI PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34
Identity = 82/226 (36.28%), Postives = 128/226 (56.64%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            G+  +  K  V+A+ +   +   ND+++ P VIVDENG+ +G + + D V+ FNFR DR   L  A   ++FD F+R   PK+ +  M +YD +L++P  +     E+  T GE L   G++    +ET K+ HVTFF+NG      +   EE   IPS    T++++P+M A E+ E   + I S ++  + +NL N DMVGH+G +EA V A +  D+ V  II
Sbjct:  210 GDGVYYSKGPVDAISEGYGR-GENDEFIKPTVIVDENGRPIGRMNENDTVIFFNFRPDRARQLTYAFVNDEFDNFERKSHPKVHFVCMTEYDEKLEVPIAF--PSEELKNTLGEVLSKEGIKQLRIAETEKYAHVTFFFNGGVEKQNEG--EERCLIPSPKVATYDLKPEMSAYEVTEELIERIGSGKYDVIVLNLANMDMVGHSGIMEAAVKAVEVVDDCVGKII 430          
The following BLAST results are available for this feature:
BLAST of FC930478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
PMGI_MESCR7.104e-11689.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_RICCO2.985e-11487.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU6.649e-11487.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG1_ARATH7.351e-11388.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MAIZE8.986e-11185.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG2_ARATH8.986e-11186.73Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMGI_TOBAC6.440e-10984.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN3.354e-5754.13Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC3.354e-5754.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METBU3.989e-3436.282,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34008A03EF PostHarvC1 Citrus clementina cDNA clone C34008A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930478 ID=FC930478; Name=FC930478; organism=Citrus clementina; type=EST; length=684bp
GGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAACT
AAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTTGTCATTG
TTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGTGATGCAGTT
GTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGCTAAGGCCCT
TGAATATGAAGATTTTGACAAATTTGATCGAGTTCGGTTCCCTAAAATCC
GTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTTCCCAGTCAT
TACCTTGTGTCTCCTCCAGAGATAGACAGAACATCTGGTGAATATTTAGT
GCATAATGGTGTCCGTACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGAC
ATGTCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAAT
TTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGT
ACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAGAGGGCAAAGAAGGCCA
TCCTTAGTCGCAGGTTCCACCAGGTACGTGTTAACCTACCAAATAGTGAC
ATGGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGC
TGCTGATGAAGCTGTCAAGATAATCATTNGATGC
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