FC930486

Overview
NameFC930486
Unique NameFC930486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930486 vs. ExPASy Swiss-Prot
Match: GGH_ARATH (Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.411e-80
Identity = 149/216 (68.98%), Postives = 179/216 (82.87%), Query Frame = 3
Query:   87 LWIPIL-LCLFNELSFAEAESSTILLPSQQNNADSVSTTFSAHCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKNGLYYDIVEKIFKKILEKNDVGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGNIVPRFPPELLKKVSTDCLVM 731
            +W+P++ L LF + S   A+++TILLPSQ     S S      C APDP+LNYRPVIGILSHPGDGASGRLSNAT+AS IAASYVK  ESGGARVIPLIFNEPEEILF+KLELVNG++ TGGWAK GLY++IV+KIF K+LE+ND G+HFP+YAICLGFELL+MI+S++R+I E  D  N AS+LQFV+N+NI+G I  RFPPELLKK+ TDCLVM
Sbjct:    5 VWLPLVALSLFKD-SIIMAKAATILLPSQTGFDISRSPV----CSAPDPNLNYRPVIGILSHPGDGASGRLSNATDASSIAASYVKLAESGGARVIPLIFNEPEEILFQKLELVNGVILTGGWAKEGLYFEIVKKIFNKVLERNDAGEHFPIYAICLGFELLTMIISQNRDIFEKMDARNSASSLQFVENVNIQGTIFQRFPPELLKKLGTDCLVM 215          
BLAST of FC930486 vs. ExPASy Swiss-Prot
Match: GGH_SOYBN (Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 122/207 (58.94%), Postives = 147/207 (71.01%), Query Frame = 3
Query:  111 LFNELSFAEAESSTILLPSQQNNADSVSTTFSAHCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKNGLYYDIVEKIFKKILEKNDVGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGNIVPRFPPELLKKVSTDCLVM 731
            LF  L  A +    I LPSQ ++ DSVS      C A DPSLNY+PVIGIL+HPGDGASGRLSNAT  SYIAASYVKFVESGGARVIPLI+NE  E L +KL+LVNG+L+TGGWA +G Y D +  IFKK LE+ND GDHFPV A  LG  L+  IVSE  +ILE F  ++  S+L      N +G++  RFP +LL ++ TDCLV+
Sbjct:   15 LFTCLLSATSHDDHIFLPSQLHDDDSVS------CTATDPSLNYKPVIGILTHPGDGASGRLSNATGVSYIAASYVKFVESGGARVIPLIYNESPENLNKKLDLVNGVLFTGGWAVSGPYLDTLGNIFKKALERNDAGDHFPVIAFNLGGNLVIRIVSEQTDILEPFTASSLPSSLVLWNEANAKGSLFQRFPSDLLTQLKTDCLVL 215          
BLAST of FC930486 vs. ExPASy Swiss-Prot
Match: GGHA_DICDI (Gamma-glutamyl hydrolase A OS=Dictyostelium discoideum GN=gghA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 49/140 (35.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  234 LNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYTGG---WAKNGLYYDIVEKIFKKILEKNDVGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQF 644
            +N RP+IGIL+ P DG          + YIAASYVK++ES GARV+P++++   + L E +  +NG+ + GG   +    +Y D ++ I+ +++E N+ GD+FP++  C+GF+ L+++ +++ N+L +++  N    L F
Sbjct:   26 INNRPIIGILTQPTDGDM----TTFGSQYIAASYVKYIESAGARVVPILYDIDIKSLTELMGSINGVFFPGGGVDFNNQTVYTDTIQSIWSQVVEFNNNGDYFPLWGTCMGFQELALLSADNFNLLSSYNSENYTVPLNF 161          
BLAST of FC930486 vs. ExPASy Swiss-Prot
Match: GGHB_DICDI (Gamma-glutamyl hydrolase B OS=Dictyostelium discoideum GN=gghB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19
Identity = 56/170 (32.94%), Postives = 94/170 (55.29%), Query Frame = 3
Query:  231 SLNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYTGG---WAKNGLYYDIVEKIFKKILEKNDVGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGNIVPRFPPELLKKVSTDCLVM 731
            ++N  PVIGIL+ P   +   ++     +Y+ ASYVK+VES GARV+P+ +N+ +E L    + +NGIL  GG   +     Y   +  I+  +L+ N  GD+FP++  CLG E +  + +E  ++L  F+  N +  L F  NI +E  I+   P  ++  ++ D + M
Sbjct:   22 TINNTPVIGILTQPFPSS---INIKYGDNYLMASYVKYVESAGARVVPIFYNQDDESLTTIFKQINGILLPGGDVDFKTEIQYVKTLTLIWDYVLDVNINGDYFPLWGTCLGLEEIVSLQAESFDVLTDFNAENYSIPLNF-SNIALESKIMKNCPTNIINSLANDPITM 187          
BLAST of FC930486 vs. ExPASy Swiss-Prot
Match: GGH_MOUSE (Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 60/163 (36.81%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  243 RPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK--NGLYYDIVEKIFKKILEKNDVGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGNIVPRFPPELLKKVSTDCL 725
            RP+IG++     G   +L N     YIAASYVK++ES GARV+P+  +  +    E    +NG+L  GG A   +  Y  + +  F K LE  D G HFPV+  CLGFE LS++VS + N+L + D  ++   L F +    +  +   FP ELL  ++ + L
Sbjct:   33 RPIIGVVMQECFGKMAKLGNY----YIAASYVKYIESAGARVVPIRPDLSDAEYEELFRSINGVLLPGGGANLTDSGYSRVAKIFFSKALESFDNGGHFPVWGTCLGFEELSVLVSGE-NLLTSTDTKSKKLPLNFTEGAR-KNKMFKHFPTELLDSLALENL 189          
BLAST of FC930486 vs. ExPASy Swiss-Prot
Match: GGH_RAT (Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=Ggh PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 63/166 (37.95%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  243 RPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIP--LIFNEPE-EILFEKLELVNGILYTGGWAK--NGLYYDIVEKIFKKILEKNDVGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGNIVPRFPPELLKKVSTDCL 725
            RP+IGI+     G   +L       YIAASYVKF+ES GARV+P  L  N+ + E LF     +NG+L  GG A   +  Y  + +  F K LE  D GD+FPV+  CLG E LS++VS D N+L   + ++    L F ++ + +  +    P ELL  ++++ L
Sbjct:   33 RPIIGIIMQECYGNMTKLGRF----YIAASYVKFIESAGARVVPIRLDLNDAQYETLFRS---INGVLLPGGGANLTHSGYSRVAKIFFTKALESFDNGDYFPVWGTCLGLEELSVLVSND-NLLTLTNTSSVKLPLNFTRD-SKQSRMFRNLPEELLNSLASENL 189          
BLAST of FC930486 vs. ExPASy Swiss-Prot
Match: GGH_HUMAN (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 57/166 (34.34%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  243 RPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPLIFNEPE---EILFEKLELVNGILYTGGWA--KNGLYYDIVEKIFKKILEKNDVGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGNIVPRFPPELLKKVSTDCL 725
            +P+IGIL         ++       YIAASYVK++ES GARV+P+  +  E   EILF+    +NGIL+ GG    +   Y  + +  +   ++  D GD+FPV+  CLGFE LS+++S +  +L   D  + A  L F     +   +   FP ELL  ++ + L
Sbjct:   33 KPIIGILMQK---CRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKS---INGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE-CLLTATDTVDVAMPLNFTGG-QLHSRMFQNFPTELLLSLAVEPL 190          
BLAST of FC930486 vs. ExPASy Swiss-Prot
Match: GGH_BOVIN (Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 60/175 (34.29%), Postives = 90/175 (51.43%), Query Frame = 3
Query:  216 PAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESGGARVIPL---IFNEPEEILFEKLELVNGILYTGGWAK--NGLYYDIVEKIFKKILEKNDVGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGNIVPRFPPELLKKVSTDCL 725
            PAP P    +P+IGIL       + R   A    YIAASYVKF+ES GARV+P+   + NE  E LF+    +NG+L+ GG        Y  + +  +   ++    GD+FPV+  CLGFE L  +VS + ++L   D       L F +   ++  +   FP +LL  ++ + L
Sbjct:   27 PAPTPK---KPIIGILMQKCHNKNMR---ALGKYYIAASYVKFLESAGARVVPVRLDLKNEEYEKLFKS---INGVLFPGGSVNLMRSGYARVAKMFYNLSIKSFGEGDYFPVWGTCLGFEELIYLVSGE-SLLTLTDTVGIKLPLNFSRG-TLQSRMFQNFPADLLLSLAVEPL 190          
The following BLAST results are available for this feature:
BLAST of FC930486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GGH_ARATH2.411e-8068.98Gamma-glutamyl hydrolase OS=Arabidopsis thaliana G... [more]
GGH_SOYBN1.053e-5958.94Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1[more]
GGHA_DICDI8.717e-2235.00Gamma-glutamyl hydrolase A OS=Dictyostelium discoi... [more]
GGHB_DICDI1.066e-1932.94Gamma-glutamyl hydrolase B OS=Dictyostelium discoi... [more]
GGH_MOUSE6.907e-1936.81Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE... [more]
GGH_RAT4.950e-1737.95Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=G... [more]
GGH_HUMAN1.592e-1534.34Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE... [more]
GGH_BOVIN3.547e-1534.29Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2... [more]
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Properties
Property NameValue
Genbank descriptionC34008A11EF PostHarvC1 Citrus clementina cDNA clone C34008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930486 ID=FC930486; Name=FC930486; organism=Citrus clementina; type=EST; length=733bp
GATCTATCCTCAACTACGTTTGCTTTCCACCAAGTATTTTTCCCAAAATG
CCCCCGTCTCCCACCAGGCGGAAGCCGCGGAACTGCCTCTGGATTCCGAT
TCTCCTGTGCCTATTCAACGAACTTTCTTTCGCTGAAGCCGAGTCGTCGA
CGATTCTTCTACCGAGTCAACAGAACAATGCTGACTCAGTGAGTACTACC
TTCTCTGCTCATTGTCCTGCTCCCGATCCGAGTTTGAATTACCGGCCGGT
GATCGGTATTCTAAGTCATCCAGGCGACGGCGCTTCGGGGAGGCTGAGTA
ACGCCACCAACGCGTCTTATATCGCCGCGTCGTACGTGAAGTTCGTTGAA
TCAGGAGGCGCTCGTGTCATCCCTCTCATTTTCAATGAACCCGAAGAGAT
TCTTTTTGAGAAGCTTGAATTGGTGAACGGTATACTGTATACTGGCGGTT
GGGCTAAAAACGGTTTGTACTACGATATTGTTGAAAAAATTTTCAAGAAA
ATTTTAGAGAAGAATGATGTGGGCGATCATTTTCCAGTATATGCCATTTG
CTTAGGCTTTGAACTTTTATCAATGATCGTTAGCGAGGACAGAAACATTC
TGGAAACATTTGATGGAGCAAATCAGGCATCTACCCTCCAATTCGTCAAA
AACATTAATATTGAAGGGAACATTGTTCCAAGATTTCCCCCGGAGCTGCT
TAAGAAAGTGAGTACGGATTGCCTGGTTATGCA
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