FC930488

Overview
NameFC930488
Unique NameFC930488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: U558_DICDI (UPF0558 protein OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.356e-21
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 3
Query:  231 LPNSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIAN 491
            L  +DL+PGVYEGG KLWE SID++  L  +     I  SGK+VLE+GCGHGLPGI+ CL   +++ FQD+N EV+  LT PNV+ N
Sbjct:  116 LDKTDLIPGVYEGGFKLWECSIDIINYLFEE----KIDLSGKKVLEIGCGHGLPGIY-CLLNGSIVTFQDYNEEVIYNLTQPNVLIN 197          

HSP 2 Score: 23.483 bits (49), Expect = 8.356e-21
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  559 FLAGDWSQIHQLLPCGKYD 615
            +++GDW  + QLL   K+D
Sbjct:  206 YISGDWKFVDQLLKNEKFD 224          
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: CA156_BOVIN (UPF0558 protein C1orf156 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.579e-19
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  237 NSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIAN 491
            +SDL+ GVYEGGLK+WE + DL+  L        + F+GK+VL+LGCG GL GI A   GA  IHFQD+N+ V+  +T+PNV+AN
Sbjct:  154 HSDLISGVYEGGLKIWECTFDLLAYLT----KAKVKFAGKKVLDLGCGSGLLGIMALKGGAKEIHFQDYNSVVIDEVTLPNVVAN 234          

HSP 2 Score: 22.3274 bits (46), Expect = 5.579e-19
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  550 KCVFLAGDWSQIHQLL 597
            KC F +G+WS+  +L+
Sbjct:  263 KCRFFSGEWSEFCKLV 278          
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: CA156_RAT (UPF0558 protein C1orf156 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  237 NSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIANVP 497
            +SDL+PGVYEGGLK+WE + DL+           + F+G++VL+LGCG GL GI A   GA  +HFQD+N  V+  +T+PNV+ANVP
Sbjct:  144 HSDLIPGVYEGGLKIWECTFDLMTYFT----KAKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPNVVANVP 226          
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: CA156_MOUSE (UPF0558 protein C1orf156 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  237 NSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIANVP 497
            +SDL+PGVYEGGLK+WE + DL+           + F+G++VL+LGCG GL GI A   GA  +HFQD+N  V+  +T+PNV+ANVP
Sbjct:  144 HSDLIPGVYEGGLKIWECTFDLLTYFT----KAKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPNVVANVP 226          
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: CA156_HUMAN (UPF0558 protein C1orf156 OS=Homo sapiens GN=C1orf156 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.710e-18
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  237 NSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIAN 491
            +SDL+ GVYEGGLK+WE + DL+           + F+GK+VL+LGCG GL GI A   G+  IHFQD+N+ V+  +T+PNV+AN
Sbjct:  154 HSDLITGVYEGGLKIWECTFDLLAYFT----KAKVKFAGKKVLDLGCGSGLLGITAFKGGSKEIHFQDYNSMVIDEVTLPNVVAN 234          

HSP 2 Score: 22.3274 bits (46), Expect = 7.710e-18
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  550 KCVFLAGDWSQIHQLL 597
            KC F +G+WS+  +L+
Sbjct:  262 KCRFFSGEWSEFCKLV 277          
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: YL35_SCHPO (UPF0558 protein C1071.05 OS=Schizosaccharomyces pombe GN=SPAC1071.05 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.453e-14
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  240 SDLVPGVYEGGLKLWEGSIDLVKAL-RLDVQNGNISFSGKRVLELGCGHGLPGIFACLEG------AAVIHFQDFNTEVLRYLTIPNVIAN 491
            +DLVP VYEGG K WE S+DL   + ++DV   N++     VLELGCG  +P I +C +          + FQDFN +VLRY+T+PN++ N
Sbjct:   92 NDLVPNVYEGGYKTWECSLDLANEIKKIDVVKNNLT----TVLELGCGSAIP-ILSCFQEFYKHRIPCTLVFQDFNVDVLRYVTLPNLLLN 177          

HSP 2 Score: 21.9422 bits (45), Expect = 7.453e-14
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 1
Query:  553 CVFLAGDWSQIHQLL 597
            C FL G WS+  QLL
Sbjct:  215 CEFLCGCWSEEMQLL 229          
The following BLAST results are available for this feature:
BLAST of FC930488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U558_DICDI8.356e-2155.17UPF0558 protein OS=Dictyostelium discoideum GN=DDB... [more]
CA156_BOVIN5.579e-1952.94UPF0558 protein C1orf156 homolog OS=Bos taurus PE=... [more]
CA156_RAT6.022e-1951.72UPF0558 protein C1orf156 homolog OS=Rattus norvegi... [more]
CA156_MOUSE6.022e-1951.72UPF0558 protein C1orf156 homolog OS=Mus musculus P... [more]
CA156_HUMAN7.710e-1850.59UPF0558 protein C1orf156 OS=Homo sapiens GN=C1orf1... [more]
YL35_SCHPO7.453e-1445.05UPF0558 protein C1071.05 OS=Schizosaccharomyces po... [more]
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Properties
Property NameValue
Genbank descriptionC34008B01EF PostHarvC1 Citrus clementina cDNA clone C34008B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930488 ID=FC930488; Name=FC930488; organism=Citrus clementina; type=EST; length=677bp
GACGTTTGGTTCTGCAGCTACTGGCAGTAGCAGGCGCTTGCAGAAGAAAA
TGTTTGGTTTATCGTTTCTTGATTCTAAAGAGGATGAAACTCCTGTCCCT
CCTCCTCCTCCTTCCCTTGAAGTGCTTCCTTCTGAGGTTTCACCGTCTCT
CAACTTCACTCTGGAGCCAGTCAATTTAGGTGAACTCACTTTGCTCAAGG
GTCGGGATGAGTACTAAAGAAGTTTTAGGATTGCCTAACTCTGACTTAGT
TCCTGGAGTATATGAAGGGGGACTGAAGTTGTGGGAAGGTTCGATCGATC
TTGTTAAAGCTCTGCGCTTGGATGTTCAGAACGGTAATATATCATTTTCA
GGAAAGCGTGTTTTAGAGTTGGGATGTGGTCATGGTCTTCCTGGGATCTT
TGCTTGCCTTGAGGGTGCTGCCGTCATACATTTCCAGGATTTTAATACTG
AAGTCTTAAGATATCTGACAATCCCCAATGTAATTGCCAATGTGCCCAAA
AAGCTTCAGCCTGCAGCAACAATTGAAACAAATTGTCAGTCTGGGGCAGA
AGTGCGTTTTTTTGGCTGGTGACTGGAGTCAGATCCATCAACTCCTTCCC
TGTGGTAAGTATGATAGAAAGGATCTAAACTGTCACCCAGGGGACGGTCC
AACTTCTGGCTATGATATCATTTTGAT
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