FC930488
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: U558_DICDI (UPF0558 protein OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.356e-21 Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 3 Query: 231 LPNSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIAN 491 L +DL+PGVYEGG KLWE SID++ L + I SGK+VLE+GCGHGLPGI+ CL +++ FQD+N EV+ LT PNV+ N Sbjct: 116 LDKTDLIPGVYEGGFKLWECSIDIINYLFEE----KIDLSGKKVLEIGCGHGLPGIY-CLLNGSIVTFQDYNEEVIYNLTQPNVLIN 197 HSP 2 Score: 23.483 bits (49), Expect = 8.356e-21 Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 1 Query: 559 FLAGDWSQIHQLLPCGKYD 615 +++GDW + QLL K+D Sbjct: 206 YISGDWKFVDQLLKNEKFD 224
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: CA156_BOVIN (UPF0558 protein C1orf156 homolog OS=Bos taurus PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.579e-19 Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 3 Query: 237 NSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIAN 491 +SDL+ GVYEGGLK+WE + DL+ L + F+GK+VL+LGCG GL GI A GA IHFQD+N+ V+ +T+PNV+AN Sbjct: 154 HSDLISGVYEGGLKIWECTFDLLAYLT----KAKVKFAGKKVLDLGCGSGLLGIMALKGGAKEIHFQDYNSVVIDEVTLPNVVAN 234 HSP 2 Score: 22.3274 bits (46), Expect = 5.579e-19 Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1 Query: 550 KCVFLAGDWSQIHQLL 597 KC F +G+WS+ +L+ Sbjct: 263 KCRFFSGEWSEFCKLV 278
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: CA156_RAT (UPF0558 protein C1orf156 homolog OS=Rattus norvegicus PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 3 Query: 237 NSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIANVP 497 +SDL+PGVYEGGLK+WE + DL+ + F+G++VL+LGCG GL GI A GA +HFQD+N V+ +T+PNV+ANVP Sbjct: 144 HSDLIPGVYEGGLKIWECTFDLMTYFT----KAKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPNVVANVP 226
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: CA156_MOUSE (UPF0558 protein C1orf156 homolog OS=Mus musculus PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 3 Query: 237 NSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIANVP 497 +SDL+PGVYEGGLK+WE + DL+ + F+G++VL+LGCG GL GI A GA +HFQD+N V+ +T+PNV+ANVP Sbjct: 144 HSDLIPGVYEGGLKIWECTFDLLTYFT----KAKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPNVVANVP 226
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: CA156_HUMAN (UPF0558 protein C1orf156 OS=Homo sapiens GN=C1orf156 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 7.710e-18 Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 3 Query: 237 NSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQDFNTEVLRYLTIPNVIAN 491 +SDL+ GVYEGGLK+WE + DL+ + F+GK+VL+LGCG GL GI A G+ IHFQD+N+ V+ +T+PNV+AN Sbjct: 154 HSDLITGVYEGGLKIWECTFDLLAYFT----KAKVKFAGKKVLDLGCGSGLLGITAFKGGSKEIHFQDYNSMVIDEVTLPNVVAN 234 HSP 2 Score: 22.3274 bits (46), Expect = 7.710e-18 Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1 Query: 550 KCVFLAGDWSQIHQLL 597 KC F +G+WS+ +L+ Sbjct: 262 KCRFFSGEWSEFCKLV 277
BLAST of FC930488 vs. ExPASy Swiss-Prot
Match: YL35_SCHPO (UPF0558 protein C1071.05 OS=Schizosaccharomyces pombe GN=SPAC1071.05 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.453e-14 Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 240 SDLVPGVYEGGLKLWEGSIDLVKAL-RLDVQNGNISFSGKRVLELGCGHGLPGIFACLEG------AAVIHFQDFNTEVLRYLTIPNVIAN 491 +DLVP VYEGG K WE S+DL + ++DV N++ VLELGCG +P I +C + + FQDFN +VLRY+T+PN++ N Sbjct: 92 NDLVPNVYEGGYKTWECSLDLANEIKKIDVVKNNLT----TVLELGCGSAIP-ILSCFQEFYKHRIPCTLVFQDFNVDVLRYVTLPNLLLN 177 HSP 2 Score: 21.9422 bits (45), Expect = 7.453e-14 Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 1 Query: 553 CVFLAGDWSQIHQLL 597 C FL G WS+ QLL Sbjct: 215 CEFLCGCWSEEMQLL 229 The following BLAST results are available for this feature:
BLAST of FC930488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930488 ID=FC930488; Name=FC930488; organism=Citrus clementina; type=EST; length=677bpback to top |