FC930491

Overview
NameFC930491
Unique NameFC930491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930491_ssr233 microsatellite FC930491_ssr233:233..242. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8032 contig Ccv1_Contig8032:42..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930491 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 53/187 (28.34%), Postives = 85/187 (45.45%), Query Frame = 1
Query:  208 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLCLYVLAFGFSGLLF 720
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KDPR ++H+G W  KI     +++  F++P     S +  +   G+               H WNE+WV   E+     WY ALL  +   Y+L+    GLL+
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDPRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLY 225          
BLAST of FC930491 vs. ExPASy Swiss-Prot
Match: SERC3_BOVIN (Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  349 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLCLYVLAFGFSGLLF 720
            AV R+S    +FF   S+LM+ VK  KDPR ++H+G W  KI     +++  F++P     + +  I   G+               H WNE+WV   E+     WY ALL V+   Y+L+  F+GLL+
Sbjct:   96 AVYRISFALAVFFFAFSLLMLNVKTSKDPRAAIHNGFWFFKIAAIVGVMVGSFYIPGGHFNTAWFVIGMVGAAFFILIQLVLLVDFAHSWNESWVNRMEEGNPKCWYAALLSVTSLFYILSIIFAGLLY 224          
BLAST of FC930491 vs. ExPASy Swiss-Prot
Match: SERC3_HUMAN (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 52/187 (27.81%), Postives = 84/187 (44.92%), Query Frame = 1
Query:  208 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLCLYVLAFGFSGLLF 720
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KD R ++H+G W  KI     +++  F++P     S +  +   G+               H WNE+WV   E+     WY ALL  +   Y+L+    GLL+
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLY 225          
BLAST of FC930491 vs. ExPASy Swiss-Prot
Match: SERC3_MOUSE (Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 39/129 (30.23%), Postives = 59/129 (45.74%), Query Frame = 1
Query:  349 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLCLYVLAFGFSGLLF 720
            AV R++    +FF    +LM+ VK  KDPR ++H+G W  KI     ++I  F++P       +      G+               H WNE WV   E+     WY ALL  +   Y+L+  F+ LL+
Sbjct:   97 AVYRINFAVAIFFFAFFLLMLKVKTSKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFIIIQLVLLVDMAHSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLY 225          
The following BLAST results are available for this feature:
BLAST of FC930491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SERC3_PONAB8.534e-1428.34Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
SERC3_BOVIN1.901e-1333.33Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=... [more]
SERC3_HUMAN1.232e-1227.81Serine incorporator 3 OS=Homo sapiens GN=SERINC3 P... [more]
SERC3_MOUSE3.964e-1130.23Serine incorporator 3 OS=Mus musculus GN=Serinc3 P... [more]
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Properties
Property NameValue
Genbank descriptionC34008B04EF PostHarvC1 Citrus clementina cDNA clone C34008B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930491 ID=FC930491; Name=FC930491; organism=Citrus clementina; type=EST; length=720bp
GGCGGTCTCTCCTAATATTCTTCGCTTAGCGCTTGCGATCATCGCCTTTT
CTATTTCACTTTCCCTTTCTCCTTCAAATTCAATCAAATATCCCAGTTTG
TGAGAGAAGAGAAGATGTGGGCGGCGTCTTGTCTTGCGTCGTGCTGTGCG
GCGTGCGCGTGTGACGCGTGCCGCTCGGCTGTGTCGGGGATCAGCAGGAG
GTCAGCTAGGATTGCTTACTGCGGGCTGTTTGCTCTCTCTCTGATCGTTT
CGTGGATTCTTCGTGAAGTCGCCGCTCCGCTCATGGAGAAGCTCCCTTGG
ATTAATCATTTTCATAAGACACCTAGCAGGGAGTGGTTTGAAACTGATGC
TGTGCTGCGAGTTAGCTTGGGAAATTTTCTCTTTTTCACTATTTTGTCAA
TTTTAATGGTTGGTGTGAAAAATCAGAAAGATCCCCGTGATAGCTTGCAC
CATGGTGGATGGATGATGAAAATTATTTGTTGGTGCCTTCTGGTGATCTT
TATGTTTTTCCTTCCAAATGAGATTGTCAGCTTCTATGAGTCAATATCAA
AGTTTGGCTCGGGTTTGTTTCTTCTTGTTCAAGTTGTCCTTTTATTGGAC
TTTGTTCACAGATGGAATGAGACGTGGGTTGGATATGATGAGCAGTTCTG
GTATGTTGCCCTATTGGTTGTTTCTCTTTGTTTGTACGTGCTGGCATTTG
GCTTCTCGGGACTTCTTTTC
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