FC930494

Overview
NameFC930494
Unique NameFC930494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15499 contig Ccv1_Contig15499:9..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: SFGH_ARATH (S-formylglutathione hydrolase OS=Arabidopsis thaliana GN=SFGH PE=1 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 6.409e-99
Identity = 169/203 (83.25%), Postives = 181/203 (89.16%), Query Frame = 3
Query:   96 TEISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDAT 704
            +EI S+KMF GYNKR+KHFS TLGCSM F IYF       HK PVLYWLSGLTCTDENFI KSGAQRAAS  G+AL+APDTSPRGLNVEGEADS+DFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENF QL+T++ASI GHSMGGHGALTI+L+NLDKYKSVSAFAPI NP+NC WGQKAFTNYLG NKA WEEYDAT
Sbjct:    6 SEIGSTKMFDGYNKRYKHFSETLGCSMTFSIYFPPSASSSHKSPVLYWLSGLTCTDENFIIKSGAQRAASTHGIALVAPDTSPRGLNVEGEADSYDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFSQLDTTKASISGHSMGGHGALTIYLRNLDKYKSVSAFAPITNPINCAWGQKAFTNYLGDNKAAWEEYDAT 208          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: ESTD_BOVIN (S-formylglutathione hydrolase OS=Bos taurus GN=ESD PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.645e-70
Identity = 126/203 (62.07%), Postives = 156/203 (76.85%), Query Frame = 3
Query:   99 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDAT 704
            ++SSSK FGG  K F+H S  L C M F +Y         K PVLYWLSGLTCT++NFI+KSG  +AAS  G+ +IAPDTSPRG N++GE DSWDFG GAGFY++AT++ WK N+RMY YV KELP+L+++NFP ++  R S+FGHSMGGHGAL   LKN  KYKSVSAFAP+CNPV C WG+KAFT YLG++++ WE YDAT
Sbjct:    5 QVSSSKCFGGLQKVFEHDSVELKCKMKFAVYLPPKAETG-KCPVLYWLSGLTCTEQNFISKSGYHQAASEHGLVVIAPDTSPRGCNIKGEEDSWDFGTGAGFYVDATEDLWKTNYRMYSYVTKELPQLVNDNFP-VDPQRMSVFGHSMGGHGALICALKNPGKYKSVSAFAPLCNPVLCRWGKKAFTGYLGTDQSKWEAYDAT 205          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: ESTD_RAT (S-formylglutathione hydrolase OS=Rattus norvegicus GN=Esd PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.393e-69
Identity = 128/209 (61.24%), Postives = 156/209 (74.64%), Query Frame = 3
Query:   81 METKPTEISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDAT 704
            ME K  +ISS+K FGG  K F+H S  L C M F IY         K P LYWLSGLTCT++NFI+KSG Q+AAS  G+ +IAPDTSPRG N++GE DSWDFG GAGF++NAT++ W  N+RMY YV +ELP+L++ NFP ++  R SIFGHSMGGHGAL   LKN  KY+SVSAFAPICNPV CPWG+KAF  YLG +++ W+ YDAT
Sbjct:    1 MELK--QISSNKCFGGLQKVFEHSSVELKCKMKFAIYLPPQAESA-KCPALYWLSGLTCTEQNFISKSGCQQAASEHGLVVIAPDTSPRGCNIKGEDDSWDFGTGAGFFVNATEDPWNTNYRMYSYVTEELPQLINANFP-VDPQRISIFGHSMGGHGALICALKNPGKYRSVSAFAPICNPVLCPWGKKAFNGYLGPDQSKWKAYDAT 205          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: ESTD_PIG (S-formylglutathione hydrolase OS=Sus scrofa GN=ESD PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.102e-69
Identity = 125/203 (61.58%), Postives = 154/203 (75.86%), Query Frame = 3
Query:   99 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDAT 704
            ++SS+K FGG  K F+H S  L C M F IY         K P LYWLSGLTCT++NFI KSG  +AAS  G+ +IAPDTSPRG N++GE +SWDFG GAGFYL+AT++ WK N+RMY YV +ELP+L++ NFP ++  R SIFGHSMGGHGAL   LKN  KYKSVSAFAPICNPV CPWG+KAF+ YLG++++ W+ YDAT
Sbjct:    5 QLSSNKCFGGLQKVFEHDSVELKCKMKFAIYLPPKAETG-KCPALYWLSGLTCTEQNFITKSGYHQAASEHGLVVIAPDTSPRGCNIKGEDESWDFGTGAGFYLDATEDPWKTNYRMYSYVTEELPQLINANFP-VDPQRMSIFGHSMGGHGALICTLKNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDESKWKAYDAT 205          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: ESTD_MOUSE (S-formylglutathione hydrolase OS=Mus musculus GN=Esd PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.292e-69
Identity = 124/203 (61.08%), Postives = 154/203 (75.86%), Query Frame = 3
Query:   99 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDAT 704
            +ISS++ FGG  K F+H S  L C M F +Y         K P LYWLSGLTCT++NFI+KSG Q+AAS  G+ +IAPDTSPRG N++GE DSWDFG GAGFY+NAT++ WK N+RMY YV +ELP+L++ NFP ++  R SIFGHSMGGHGAL   LKN  KY+SVSAFAPICNPV C WG+KAF+ YLG +++ W+ YDAT
Sbjct:    5 QISSNRCFGGLQKVFEHSSVELKCKMRFAVYLPPQAESG-KCPALYWLSGLTCTEQNFISKSGYQQAASEHGLVVIAPDTSPRGCNIKGEDDSWDFGTGAGFYVNATEDPWKANYRMYSYVTEELPQLINANFP-VDPQRMSIFGHSMGGHGALICALKNPGKYRSVSAFAPICNPVLCSWGKKAFSGYLGPDESKWKAYDAT 205          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: ESTD_HUMAN (S-formylglutathione hydrolase OS=Homo sapiens GN=ESD PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 5.292e-69
Identity = 123/203 (60.59%), Postives = 155/203 (76.35%), Query Frame = 3
Query:   99 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDAT 704
            +ISS+K FGG  K F+H S  L C M F +Y         K P LYWLSGLTCT++NFI+KSG  ++AS  G+ +IAPDTSPRG N++GE +SWDFG GAGFY++AT++ WK N+RMY YV +ELP+L++ NFP ++  R SIFGHSMGGHGAL   LKN  KYKSVSAFAPICNPV CPWG+KAF+ YLG++++ W+ YDAT
Sbjct:    5 QISSNKCFGGLQKVFEHDSVELNCKMKFAVYLPPKAETG-KCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFP-VDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDAT 205          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOSM (S-formylglutathione hydrolase frmB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmB PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.265e-54
Identity = 106/203 (52.22%), Postives = 137/203 (67.49%), Query Frame = 3
Query:  102 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKW-KNWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDATS 707
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+   + ++APDTSPRG +V  +AD +D G GAGFYLNATQ  W ++++MYDY+  ELP L+ ++FP   T+R SI GHSMGG GAL + L+N D+Y SVSAF+PI +P   PWGQ+AF  YLG NK  W +YD  S
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAGN-EKLPVLYWLSGLTCNEQNFITKSGMQRYAAEHNIIVVAPDTSPRGSHV-ADADRYDLGQGAGFYLNATQAPWNEHYKMYDYIHNELPDLVMQHFPA--TTRKSISGHSMGGLGALVLALRNPDEYVSVSAFSPIVSPSQVPWGQQAFAAYLGENKEAWLDYDPVS 202          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOHS (S-formylglutathione hydrolase frmB OS=Escherichia coli O9:H4 (strain HS) GN=frmB PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.265e-54
Identity = 106/203 (52.22%), Postives = 137/203 (67.49%), Query Frame = 3
Query:  102 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKW-KNWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDATS 707
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+   + ++APDTSPRG +V  +AD +D G GAGFYLNATQ  W ++++MYDY+  ELP L+ ++FP   T+R SI GHSMGG GAL + L+N D+Y SVSAF+PI +P   PWGQ+AF  YLG NK  W +YD  S
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAAN-EKLPVLYWLSGLTCNEQNFITKSGMQRYAAEHNIIVVAPDTSPRGSHV-ADADRYDLGQGAGFYLNATQAPWNEHYKMYDYIRNELPDLVMQHFPA--TTRKSISGHSMGGLGALVLALRNPDEYVSVSAFSPIVSPSQAPWGQQAFAAYLGENKDAWLDYDPVS 202          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: SFGH1_SHISS (S-formylglutathione hydrolase frmB OS=Shigella sonnei (strain Ss046) GN=frmB PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.653e-54
Identity = 106/203 (52.22%), Postives = 137/203 (67.49%), Query Frame = 3
Query:  102 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKW-KNWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDATS 707
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+   + ++APDTSPRG +V  +AD +D G GAGFYLNATQ  W ++++MYDY+  ELP L+ ++FP   T+R SI GHSMGG GAL + L+N D+Y SVSAF+PI +P   PWGQ+AF  YLG NK  W +YD  S
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAAN-EKLPVLYWLSGLTCNEQNFITKSGMQRYAAEHNIIVVAPDTSPRGSHV-ADADRYDLGQGAGFYLNATQAPWNEHYKMYDYIRNELPDLVMQHFPA--TTRKSISGHSMGGLGALVLALRNPDEYVSVSAFSPIVSPSQVPWGQQAFAAYLGENKDAWLDYDPVS 202          
BLAST of FC930494 vs. ExPASy Swiss-Prot
Match: SFGH1_ECOL6 (S-formylglutathione hydrolase frmB OS=Escherichia coli O6 GN=frmB PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.653e-54
Identity = 106/203 (52.22%), Postives = 136/203 (67.00%), Query Frame = 3
Query:  102 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXHKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKW-KNWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIHLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDATS 707
            I     FGG+   ++H+S +L C MN  +Y         K PVLYWLSGLTC ++NFI KSG QR A+   + ++APDTSPRG +V  +AD +D G GAGFYLNATQ  W ++++MYDY+  ELP L+  +FP   T+R SI GHSMGG GAL + L+N D+Y SVSAF+PI +P   PWGQ+AF  YLG NK  W +YD  S
Sbjct:    4 IEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAEN-EKLPVLYWLSGLTCNEQNFITKSGMQRYAAEHNIIVVAPDTSPRGSHV-ADADRYDLGQGAGFYLNATQAPWNEHYKMYDYIRNELPNLVMHHFPA--TARKSISGHSMGGLGALVLALRNPDEYASVSAFSPIVSPSQVPWGQQAFAAYLGENKDAWLDYDPVS 202          
The following BLAST results are available for this feature:
BLAST of FC930494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
SFGH_ARATH6.409e-9983.25S-formylglutathione hydrolase OS=Arabidopsis thali... [more]
ESTD_BOVIN1.645e-7062.07S-formylglutathione hydrolase OS=Bos taurus GN=ESD... [more]
ESTD_RAT1.393e-6961.24S-formylglutathione hydrolase OS=Rattus norvegicus... [more]
ESTD_PIG3.102e-6961.58S-formylglutathione hydrolase OS=Sus scrofa GN=ESD... [more]
ESTD_MOUSE5.292e-6961.08S-formylglutathione hydrolase OS=Mus musculus GN=E... [more]
ESTD_HUMAN5.292e-6960.59S-formylglutathione hydrolase OS=Homo sapiens GN=E... [more]
SFGH1_ECOSM1.265e-5452.22S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_ECOHS1.265e-5452.22S-formylglutathione hydrolase frmB OS=Escherichia ... [more]
SFGH1_SHISS1.653e-5452.22S-formylglutathione hydrolase frmB OS=Shigella son... [more]
SFGH1_ECOL61.653e-5452.22S-formylglutathione hydrolase frmB OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC34008B07EF PostHarvC1 Citrus clementina cDNA clone C34008B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930494 ID=FC930494; Name=FC930494; organism=Citrus clementina; type=EST; length=709bp
GGACTCACTCTTTAATCTGCTGAAAGAACAAAGACCGTACACACACAGGG
AGAGCTCAACACAATCAATCACAGTGAAAAATGGAGACGAAGCCGACAGA
GATAAGCAGTTCTAAGATGTTCGGTGGATACAACAAAAGATTCAAGCATT
TCAGTACAACACTGGGCTGCTCCATGAATTTCCACATCTACTTCCCTCCT
TCTTCTTCTCCATCCCACAAATTCCCTGTGCTTTACTGGCTCTCTGGTCT
TACCTGCACTGATGAAAATTTTATTGCTAAGTCAGGAGCTCAACGTGCTG
CTTCAGCTGAAGGTGTGGCTCTGATTGCCCCTGATACATCTCCAAGAGGC
CTGAATGTGGAAGGAGAGGCAGATAGCTGGGATTTTGGTGTAGGTGCTGG
ATTTTATCTTAATGCTACACAGGAGAAGTGGAAGAACTGGCGTATGTATG
ACTATGTTGTCAAGGAATTGCCCAAACTTCTGAGTGAAAATTTTCCACAG
CTTGAAACTTCTCGAGCATCCATATTTGGTCACTCAATGGGTGGGCATGG
TGCTTTGACAATCCATCTGAAAAATCTTGACAAGTATAAGTCTGTATCTG
CCTTTGCTCCAATTTGCAATCCTGTCAACTGTCCCTGGGGTCAGAAGGCT
TTTACAAATTATCTTGGTAGTAACAAAGCTGATTGGGAGGAATATGATGC
CACATCTCT
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