FC930497

Overview
NameFC930497
Unique NameFC930497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11637 contig Ccv1_Contig11637:612..1314. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA_PEA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 440.269 bits (1131), Expect = 4.833e-123
Identity = 206/228 (90.35%), Postives = 222/228 (97.37%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSXLFT 685
            GR+DGCS GKGGSMHFYKKDSGFYGGHGIVGAQ+PLGCGLAF QKY KDE+VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIER+RKL+L+HD+ATEKELKD EKEVRKEVD+AIAKAK+SPMP+PS LF+
Sbjct:  146 GRRDGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKDSPMPDPSDLFS 373          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 436.417 bits (1121), Expect = 6.980e-122
Identity = 204/228 (89.47%), Postives = 220/228 (96.49%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSXLFT 685
            GRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPLGCGLAFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQ RDPIER+RKL+L HD+ATEKELKD+EKE+RKEVDDA+A+AKESP+P+ S LFT
Sbjct:  142 GRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPLGCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKEIRKEVDDAVAQAKESPIPDASELFT 369          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At1g59900 PE=1 SV=2)

HSP 1 Score: 435.647 bits (1119), Expect = 1.191e-121
Identity = 204/228 (89.47%), Postives = 220/228 (96.49%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSXLFT 685
            GR+ GCS GKGGSMHFYKK+S FYGGHGIVGAQ+PLGCG+AFAQKY+K+E VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERI+KL+L+HDLATEKELKD+EKE+RKEVDDAIAKAK+ PMPEPS LFT
Sbjct:  138 GRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGCGIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFT 365          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 425.246 bits (1092), Expect = 1.609e-118
Identity = 200/228 (87.72%), Postives = 216/228 (94.74%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSXLFT 685
            GR+DGCS GKGGSMHFYKK+SGFYGGHGIVGAQ+PLG GLAFAQKY K++ VTFA+YGDGAANQGQLFEALN+AALWDLPAILVCENNHYGMGTAEWRAAKSP+YYKRGDYVPGL+VDGMD  AVKQAC FAK+HALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDP+ERIR LILAH++ATE ELKDIEKE RK VD+AIAKAKESPMP+PS LFT
Sbjct:  140 GRRDGCSRGKGGSMHFYKKESGFYGGHGIVGAQVPLGIGLAFAQKYKKEDYVTFAMYGDGAANQGQLFEALNMAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLRVDGMDVFAVKQACTFAKQHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPVERIRSLILAHNIATEAELKDIEKENRKVVDEAIAKAKESPMPDPSELFT 367          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA_DICDI (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.200e-75
Identity = 140/228 (61.40%), Postives = 172/228 (75.44%), Query Frame = 2
Query:    5 RKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSXLFT 685
            ++ GCS GKGGSMH + K+  FYGG+GIVGAQ PLG G+AFAQKY+K   V  A+YGDGAANQGQLFEA N+A+LW LP I +CENN YGMGT++ R+     +Y RG YV GLKVDGMD  AVK+A K+A E     NGP+ILEMDTYRY GHSMSDPG TYRTR+E++ VRQ RDPIE IR++IL + +ATE +L  IE+ VR E++ A  KA  +P+P+   LFT
Sbjct:  132 KETGCSKGKGGSMHMFTKN--FYGGNGIVGAQCPLGAGIAFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFICENNKYGMGTSQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPIILEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAIEETVRDEMEKASEKAIAAPLPQARELFT 357          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.022e-72
Identity = 137/228 (60.09%), Postives = 167/228 (73.25%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSXLF 682
            GR  G  HGKGGSMH Y K+  FYGG+GIVGAQ PLG G+A A KY + + V   LYGDGAANQGQLFEA N+A LWDLP + VCENN +GMGT   R++ S  YY RGDYVPG+ VDGMD LAV++A K+AKE+     GP+++EM TYRYHGHSMSDPG++YRTR+EI  VR+ RDPI   +  I+   LATE+ELK I+KEVRKEVD+A+  A    +  P  L+
Sbjct:  134 GRVAGNVHGKGGSMHMYTKN--FYGGNGIVGAQQPLGAGVALAMKYREQKNVCVTLYGDGAANQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDYVPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPEALY 359          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA_SCHPO (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=pda1 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.277e-72
Identity = 132/224 (58.93%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEP 670
            GR+ G S GKGGSMH + K+  FYGG+GIVGAQIPLG G+ FAQKY +  T TFALYGDGA+NQGQ FEA N+A LW LP I  CENN YGMGT+  R++    +YKRG Y+PGL V+GMD LAV QA KFAK++ ++N  P+++E  TYRY GHSMSDPG+TYR+R+E+  VR  RDPIE ++K I+   +A   ELK+IEK +R  VD+ +  A+ESP P+P
Sbjct:  157 GRQCGASKGKGGSMHIFAKN--FYGGNGIVGAQIPLGAGIGFAQKYLEKPTTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVLAVLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEWGVANANELKNIEKRIRGMVDEEVRIAEESPFPDP 378          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA_SMIMA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial (Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.973e-72
Identity = 129/222 (58.11%), Postives = 167/222 (75.23%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMP 664
            GR+ GC+ GKGGSMH Y K+  FYGG+GIVGAQ+PLG G+A A KY++ + +   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PG+ VDGMD L V++A KFA  +     GPM++E+ TYRYHGHSMSDPG +YRTR+EI  VR + DPI  ++  ++ ++LA+ +ELK+I+ EVRKE++DA   A   P P
Sbjct:  113 GRRGGCAKGKGGSMHMYAKN--FYGGNGIVGAQVPLGVGIALACKYNEKDEICLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGIMVDGMDVLCVREATKFAAAYCRSGKGPMLMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNNNLASIEELKEIDVEVRKEIEDAAQFATADPEP 332          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.072e-72
Identity = 130/222 (58.56%), Postives = 166/222 (74.77%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMP 664
            GR+ GC+ GKGGSMH Y K+  FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A KFA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI  VR + DPI  ++  ++  +LA+ +ELK+I+ EVRKE++DA   A   P P
Sbjct:  140 GRRGGCAKGKGGSMHMYAKN--FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEP 359          
BLAST of FC930497 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.072e-72
Identity = 130/222 (58.56%), Postives = 166/222 (74.77%), Query Frame = 2
Query:    2 GRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMP 664
            GR+ GC+ GKGGSMH Y K+  FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A KFA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI  VR + DPI  ++  ++  +LA+ +ELK+I+ EVRKE++DA   A   P P
Sbjct:  140 GRRGGCAKGKGGSMHMYAKN--FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEP 359          
The following BLAST results are available for this feature:
BLAST of FC930497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_PEA4.833e-12390.35Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA2_ARATH6.980e-12289.47Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA1_ARATH1.191e-12189.47Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_SOLTU1.609e-11887.72Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_DICDI2.200e-7561.40Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_CAEEL1.022e-7260.09Probable pyruvate dehydrogenase E1 component subun... [more]
ODPA_SCHPO2.277e-7258.93Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SMIMA2.973e-7258.11Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RAT5.072e-7258.56Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MOUSE5.072e-7258.56Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionC34008B10EF PostHarvC1 Citrus clementina cDNA clone C34008B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930497 ID=FC930497; Name=FC930497; organism=Citrus clementina; type=EST; length=703bp
GGGGAGAAAGGACGGTTGTTCTCATGGAAAAGGTGGTTCGATGCATTTTT
ATAAGAAGGACTCCGGCTTTTACGGAGGCCACGGGATTGTTGGGGCTCAG
ATTCCTTTAGGCTGTGGATTGGCTTTCGCGCAGAAGTACTCGAAGGATGA
AACGGTGACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGT
TGTTCGAGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTG
GTCTGCGAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCGGC
AAAGAGTCCCTCATACTACAAGCGTGGGGATTATGTTCCTGGTTTGAAGG
TGGATGGCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAG
GAGCATGCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAG
GTATCATGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTG
ATGAGATCAGTGGTGTGAGACAGGAGCGTGATCCAATTGAAAGAATAAGA
AAGTTAATATTAGCCCATGACCTAGCGACAGAGAAAGAGCTAAAGGACAT
TGAGAAGGAAGTAAGAAAAGAAGTAGATGATGCCATTGCCAAAGCCAAGG
AGAGTCCCATGCCAGAGCCTTCTNGACTCTTCACAATGTGTATGTGAAAG
GTT
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