FC930498

Overview
NameFC930498
Unique NameFC930498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15159 contig Ccv1_Contig15159:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 347.051 bits (889), Expect = 5.912e-95
Identity = 167/243 (68.72%), Postives = 209/243 (86.01%), Query Frame = 3
Query:    3 VMEELQTALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL 731
            +MEELQ+A+ QK++LESQIA+SD T ++L QK+  AV+LLQ  + E++ELQ ERD+A++EAEELR   +  +S+  +PQ+F+DFSFSEIE AT++FD +LKIGEGGYGSIY GLLRH QVAIKML+P+S QGP E+QQE+D+LSK+RHPN++TL+GACPE W+LVYEYLP GSLEDRL+CKDNSPPLSWQ R+RIATE+C+ L+FLHS K HS+VHGDLKPANILLD+N VSKLSDFG    L
Sbjct:  388 IMEELQSAMAQKAMLESQIAKSDGTMEKLNQKLDIAVKLLQKLRDEREELQTERDRALREAEELRSHAE--TSTLQLPQYFTDFSFSEIEEATNHFDSTLKIGEGGYGSIYVGLLRHTQVAIKMLNPNSSQGPVEYQQEVDVLSKMRHPNIITLIGACPEGWSLVYEYLPGGSLEDRLTCKDNSPPLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDSNLVSKLSDFGTCSLL 628          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.498e-63
Identity = 119/242 (49.17%), Postives = 177/242 (73.14%), Query Frame = 3
Query:    6 MEELQTALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL 731
            M+ELQ    +   LESQ+ +     KE  +K  +A+ELL+++++++DE++++ + AVKE   LR+  K  +  S   +   D+SF EI  AT+ FDPS K+GEG YGS+YKG L+H+QVA+KML  +      EF++ ++ILS++RHPNLVTL+GACPE  +L+Y+Y+PNGSLED  S ++N P LSW++RIRIA+E+CS L+FLHS  P  I+HG+LKP+ ILLD+N V+K++D+GIS+ +
Sbjct:  367 MKELQMVQGRNLKLESQMRKLQDLEKEHGEKFDTAMELLKSFRQKRDEIRIDHENAVKEVNALRRLVKGETGESSGSEML-DYSFMEINEATNEFDPSWKLGEGKYGSVYKGNLQHLQVAVKMLPSYGSLNHFEFERRVEILSRVRHPNLVTLMGACPESRSLIYQYIPNGSLEDCFSSENNVPALSWESRIRIASEICSALLFLHSNIP-CIIHGNLKPSKILLDSNLVTKINDYGISQLI 606          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 106/237 (44.73%), Postives = 147/237 (62.03%), Query Frame = 3
Query:   45 LESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSH----------MPQF-FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGIS 722
            LE  I   +   KE E + ++  E  QN++K + + +  R++A +E  + R++ ++++  +            PQ  +  F++ EI  AT +F   LKIG G YG++YK  L H    +K+L     Q   +FQQE++ILSKIRHP+LV L+GACPE   LVYEY+ NGSLEDRL   +NSPPL W  R RIA E+ + L+FLH  KP  I+H DLKPANILLD NFVSK+ D G+S
Sbjct:  389 LEEAIKLEELKLKEYEARELAEKEK-QNFEKARRDAESMRERAEREIAQRREAERKSARDTKEKEKLEGTLGSPQLQYQHFAWEEIMAATSSFSEELKIGMGAYGAVYKCNLHHTTAVVKVLQSAENQLSKQFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSLEDRLFQVNNSPPLPWFERFRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLS 624          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.578e-47
Identity = 109/244 (44.67%), Postives = 146/244 (59.84%), Query Frame = 3
Query:   21 TALDQKSLLESQ----IAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAE------ELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGIS 722
            T L+Q+   ES+    + E ++ AK+   K     E      ++  EL M+     +EAE         K + +AS  S   Q+   +++ EI  AT +F  +LKIG G YGS+YK  L H   A+K+LH    Q   +F QE++ILSKIRHP+LV L+GACPE   LVYEY+ NGSL+DRL   +++PP+ W  R RIA E+ S L+FLH  KP  I+H DLKP NILLD NFVSKL D G+S
Sbjct:  392 TELNQRRFEESEKLVELKEKEEVAKDTASKEKQRYEEAMKEAEKVKELMMKEALHRREAEFKAERDAREKDKLQASLVSPGVQY-QHYTWEEIAAATSDFAENLKIGIGAYGSVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLS 634          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.995e-47
Identity = 101/230 (43.91%), Postives = 141/230 (61.30%), Query Frame = 3
Query:   51 SQIAESDQTAKELEQKIISA--VELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQF-FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL 731
            +++   + T  E E K I+    E  +  ++E+ E    R+  +K   E ++  K   SS   P+  + +F++ EI  AT +F   LKIG G YG +YK  L H   A+K+LH        +F QE++ILSKIRHP+LV L+GACP+   LVYEY+ NGSLEDRL   ++S P+ W  R+RIA E+ S L+FLH  KP  I+H DLKPANILL+ NFVSK+ D G+S  +
Sbjct:  378 NELKFEELTLLEHETKGIAKKETEKFEQKRREEREAAQRREAEMKATHEAKEKEKLEESSLVAPKLQYQEFTWEEIINATSSFSEDLKIGMGAYGDVYKCNLHHTIAAVKVLHSAESSLSKQFDQELEILSKIRHPHLVLLLGACPDHGALVYEYMENGSLEDRLFQVNDSQPIPWFVRLRIAWEVASALVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMI 607          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.929e-45
Identity = 106/250 (42.40%), Postives = 147/250 (58.80%), Query Frame = 3
Query:   12 ELQTALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSH----MPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCK------DNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL 731
            E  T L   ++ E +  E  +  +E ++   +  EL++   + + E   ER +A   AEE+RK ++    +        Q +  F + EI  AT +F   LKIG GGYGS+Y+  L H  VA+K+LH        +F QE++ILSKIRHP+L+ L+GACPE  +LVYEY+ NGSLE+RL  +         PPL W  R RIA E+ S L FLH+ +P  IVH DLKPANILLD N VSK+ D G+S+ +
Sbjct:  336 EEATRLKNLTIREEEADEVVEMERERQEDAENEAELVRECIERETE---ERLEAEARAEEVRKEKQRLEDALEGGPLQRQQYMKFEWEEIVEATSSFSDELKIGVGGYGSVYRCNLHHTTVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLLLGACPERGSLVYEYMHNGSLEERLMKRRPNVDTPQPPPLRWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMV 582          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.283e-38
Identity = 87/241 (36.10%), Postives = 140/241 (58.09%), Query Frame = 3
Query:    9 EELQTALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL 731
            + +  A++++ L  +  A   +   +  +++ +A  LL    +E  + Q+    A++   E +K   +   + H    +  ++  EI  AT  F P   IGEGGYG +Y+  L     A+K++   + +   EF +E+++LS++RHP++V L+GACPE   LVYEYL NGSLE+ +  + N PPL W  R R+  E+   L FLHS KP  IVH DLKP NILL+ N+VSK++D G+++ +
Sbjct:  355 KRVNNAVEKEELQRNTAALEKERYMKAVKEVETAKALLA---REFCQRQIAEVNALRTYLEKKKVIDQLLGTDHR---YRKYTIEEIVTATEGFSPEKVIGEGGYGKVYQCSLDSTPAAVKVVRLDTPEKKQEFLKEVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIFHRKNKPPLPWFIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLV 589          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.000e-34
Identity = 78/164 (47.56%), Postives = 111/164 (67.68%), Query Frame = 3
Query:  252 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRLSCKDNS--PPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            FS  EI+ AT++F+  L IG GG+GS+YKG +      VA+K L   S QG  EF+ E+++LSK+RH +LV+L+G C E     LVYEY+P+G+L+D L  +D +  PPLSW+ R+ I       L +LH+   ++I+H D+K  NILLD NFV+K+SDFG+SR
Sbjct:  506 FSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTLKDHLFRRDKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGLSR 669          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.412e-34
Identity = 81/181 (44.75%), Postives = 115/181 (63.54%), Query Frame = 3
Query:  201 SRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRLSCKDNS--PPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            S    S+SS        FS  EI+ AT++F+  L IG GG+GS+YKG +      VA+K L   S QG  EF  E+++LSK+RH +LV+L+G C +     LVYEY+P+G+L+D L  +D +  PPLSW+ R+ I       L +LH+   ++I+H D+K  NILLD NFV+K+SDFG+SR
Sbjct:  496 STNTKSASSLPSDLCRRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTLKDHLFRRDKASDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSR 676          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 81/182 (44.51%), Postives = 116/182 (63.74%), Query Frame = 3
Query:  192 LRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVW--TLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLH-SCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            LRK +   +S S M      +++ E+   T+NF+  L  GEGG+G +Y G +  + QVA+K+L   S QG  +F+ E+D+L ++ H NLVTLVG C E     L+YEY+ NG+L+  LS +++  PLSW+ R+RIA E    L +LH  CKP  ++H D+K  NILLD NF +KL DFG+SR
Sbjct:  561 LRKKKPSKASRSSMVANKRSYTYEEVAVITNNFERPL--GEGGFGVVYHGNVNDNEQVAVKVLSESSAQGYKQFKAEVDLLLRVHHINLVTLVGYCDEGQHLVLIYEYMSNGNLKQHLSGENSRSPLSWENRLRIAAETAQGLEYLHIGCKP-PMIHRDIKSMNILLDNNFQAKLGDFGLSR 739          
The following BLAST results are available for this feature:
BLAST of FC930498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
PUB33_ARATH5.912e-9568.72U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB32_ARATH3.498e-6349.17U-box domain-containing protein 32 OS=Arabidopsis ... [more]
PUB35_ARATH8.365e-4944.73U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB52_ARATH1.578e-4744.67U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB53_ARATH5.995e-4743.91Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB51_ARATH1.929e-4542.40U-box domain-containing protein 51 OS=Arabidopsis ... [more]
PUB34_ARATH2.283e-3836.10U-box domain-containing protein 34 OS=Arabidopsis ... [more]
Y5900_ARATH2.000e-3447.56Putative receptor-like protein kinase At5g39000 OS... [more]
Y5389_ARATH3.412e-3444.75Probable receptor-like protein kinase At5g38990 OS... [more]
Y4245_ARATH4.456e-3444.51Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC34008B11EF PostHarvC1 Citrus clementina cDNA clone C34008B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930498 ID=FC930498; Name=FC930498; organism=Citrus clementina; type=EST; length=732bp
AAGTCATGGAAGAACTTCAAACTGCTCTGGATCAGAAATCATTGCTGGAG
AGCCAAATTGCAGAATCCGATCAGACCGCAAAGGAGCTGGAGCAGAAAAT
TATCTCTGCTGTTGAACTTCTGCAGAATTACAAAAAAGAACAAGATGAAT
TGCAGATGGAGCGTGACAAAGCTGTCAAAGAAGCTGAGGAACTGAGGAAA
AGTCGAAAAGAGGCCTCAAGCAGCAGCCACATGCCTCAGTTTTTCTCTGA
TTTCTCTTTTTCAGAGATTGAGGGAGCAACTCATAACTTTGATCCTTCCC
TGAAGATTGGGGAAGGAGGATATGGGAGCATTTACAAAGGTCTCCTGCGA
CATATGCAAGTGGCTATTAAGATGTTGCACCCTCATAGCTTGCAAGGACC
CTCTGAATTTCAACAGGAGATTGATATTCTGAGTAAGATAAGACATCCAA
ATCTTGTAACTCTTGTTGGAGCCTGTCCAGAAGTGTGGACTCTCGTCTAC
GAGTATCTGCCCAATGGCAGCCTTGAAGACCGACTCAGCTGCAAGGATAA
CTCTCCCCCTTTATCCTGGCAAACTCGAATCCGCATTGCCACTGAGCTAT
GCTCTGTCCTTATCTTTCTCCATTCTTGTAAACCTCACAGCATTGTGCAT
GGTGATTTGAAACCTGCCAATATTCTTCTTGATGCTAACTTTGTTAGCAA
ACTTAGTGACTTTGGTATCTCTCGCTTTCTAT
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