FC930510

Overview
NameFC930510
Unique NameFC930510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig675 contig Ccv1_Contig675:128..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.568e-41
Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = 3
Query:  117 KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            K G +++AKF+LKPPPYPLN LEP MS+ TLEFHWGKHH+ YV+NL KQ+VGTEL DGKSLE++++ SYNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGS
Sbjct:   18 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTEL-DGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGS 132          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.722e-37
Identity = 72/108 (66.67%), Postives = 81/108 (75.00%), Query Frame = 3
Query:  141 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            KF+L+PPPYP++ALEPHMS  T EFHWGKHHRAYVDNLNKQI GTEL DGK+LED+++ +YNKG  LPAFNNAAQAWNH FFW                 LI RDFGS
Sbjct:    1 KFELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTEL-DGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGS 107          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 150.214 bits (378), Expect = 5.541e-36
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = 3
Query:  132 ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            ++A + LKPPP+ L+ALEPHMSK TLEFHWGKHHRAYVDNL KQ++GTEL +GK LE ++ ++YN GDLLPAFNNAAQAWNH+FFW                 L+ERDF S
Sbjct:    7 VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTS 116          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 5.567e-20
Identity = 51/108 (47.22%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            F  +P PY  NALE + M  +T E+H+GKHH+AYVDNLNK   GTEL D KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGS
Sbjct:    3 FVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELAD-KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGS 109          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.050e-18
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L P PY  NALEPH+S +TLE+H  KHH  YV NLN  I GTE  +GKSLE++V +S   G +   FNNAAQ WNH F+W
Sbjct:    3 FELPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGTEF-EGKSLEEIVKSS--SGGI---FNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.050e-18
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            F L   PY L+AL PH+SK+TLE+H+GKHH  YV NLNK I GTE  +  +LE++++ +  KG +   FNNAAQ WNH F+W                  I + FGS
Sbjct:    3 FTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEF-ESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGS 103          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.371e-18
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            F+L   P+ +NALEPH+S++TLE+H+GKHH  YV  LN  + GTEL + KSLE+++  S         FNNAAQ WNH F+W                  IE+ FGS
Sbjct:    2 FELPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVEGTELAE-KSLEEIIKTSTG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGEVAAAIEKAFGS 102          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 47/101 (46.53%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  162 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            PY   ALEP +SK TLEFH  KHH AYV+N N  + GT+L D +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGS
Sbjct:    9 PYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDL-DNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGS 108          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L P PY  +AL+PH+SK+TLEFH  KHH  YV NLN  + GTE  +GK+LE++V  S   G +   FNNAAQ WNH F+W
Sbjct:    3 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            F+L   PY LNALEPH+S++TLE+H GKHHRAYV+ LNK I GT   + + LE+++  S   G +   FNNAAQ WNH F+W                  I++ FGS
Sbjct:    3 FELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPF-EKEPLEEIIRKS--DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGS 103          
The following BLAST results are available for this feature:
BLAST of FC930510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SODF_SOYBN2.568e-4165.52Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL1.722e-3766.67Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH5.541e-3662.16Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_ANASP5.567e-2047.22Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_PSEAE1.050e-1857.32Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_LEGPH1.050e-1844.86Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_PHOLE1.371e-1843.93Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_SYNY32.339e-1846.53Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PSEPU3.989e-1854.88Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_COXBU3.989e-1845.79Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008C12EF PostHarvC1 Citrus clementina cDNA clone C34008C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930510 ID=FC930510; Name=FC930510; organism=Citrus clementina; type=EST; length=528bp
GATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGTTGACTGGC
CAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGGAGAAACAA
AAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGCGAAATTTGATT
TGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATATGAGCAAG
GACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTATGTGGATAA
CCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAAGTCATTGG
AAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTCCAGCTTTC
AATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAATCCATGAA
ACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACTGATTGAAA
GGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGCA
GCCACTCATTTGGTTCTGGTTGGGCCTG
back to top