FC930513

Overview
NameFC930513
Unique NameFC930513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:946..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 380.563 bits (976), Expect = 4.470e-105
Identity = 200/232 (86.21%), Postives = 211/232 (90.95%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            E++NCKLLLVDKKITNARDL+ VLEDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK TLDNDE KVGADIV
Sbjct:  268 EFDNCKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIV 499          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 6.455e-104
Identity = 198/232 (85.34%), Postives = 210/232 (90.52%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            E++NCKLLLVDKKITNARDL+ VLEDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK  LDNDE KVGADIV
Sbjct:  268 EFDNCKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIV 499          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 372.474 bits (955), Expect = 1.217e-102
Identity = 196/232 (84.48%), Postives = 212/232 (91.38%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            E+ENCKLLLVDKKITNARDLIN+LEDAIR  +PI+IIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGGTVIR+EVGL LDK  KEVLGNA+KVVLTKDTTTIVGDGSTQ+AV+KRV+QI+  IE AEQ+YE+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK+TL NDE KVGADIV
Sbjct:  262 EFENCKLLLVDKKITNARDLINILEDAIRSGFPIVIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLTLDKADKEVLGNAAKVVLTKDTTTIVGDGSTQEAVNKRVSQIKNQIEAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIV 493          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.346e-101
Identity = 193/232 (83.19%), Postives = 211/232 (90.95%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            EYENCKLLLVDKKITNARDLINVLE+AIRG YPILIIAEDIEQEALATLVVNKLRG+LKI A+KAPGFGERK+QYLDDIAILTGGTVIRDEVGL LDK    VLG A+KVVLTK++TTIVGDGSTQ+ V+KRVAQI+ LIE AEQDYE+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL++KVDAIK+TL+NDE+KVGA+IV
Sbjct:  167 EYENCKLLLVDKKITNARDLINVLEEAIRGQYPILIIAEDIEQEALATLVVNKLRGSLKICAIKAPGFGERKTQYLDDIAILTGGTVIRDEVGLTLDKADNTVLGTAAKVVLTKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIV 398          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 9.690e-84
Identity = 156/232 (67.24%), Postives = 190/232 (81.90%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            EYENCK+LLVDKKI+ ARD+I +LE AIRG YP+LI+AE++EQEALATLVVNKLRG LK+ A+KAPGFGER+S YL+DIAILTGGTV+ DE+G++L++    VLG A+K+ +TK+ TT+VGDGST   V+ RV QIR L    +QDYEREKL ERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNAT+AA          CTLLRLS KVD IK  + + E+++GADI+
Sbjct:   98 EYENCKILLVDKKISTARDIITILESAIRGNYPLLIMAEEVEQEALATLVVNKLRGTLKVVAIKAPGFGERRSSYLEDIAILTGGTVVGDEMGVSLEQATDAVLGTAAKITITKERTTVVGDGSTAADVAARVKQIRNLQMQTDQDYEREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADII 329          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.742e-69
Identity = 132/232 (56.90%), Postives = 175/232 (75.43%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            ++EN ++L+ DKKI++ +DL+ VLE   R    +LIIAEDIE EALATLVVNK RG L +AA+KAPGFG+R+   L DIAILTGG +I +EVGL+L+ V  +++G   K+ + KD TTIV DG T + V KR+AQIR  +  ++ DY++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ LS+KV+ +K +L+N+E K+GADIV
Sbjct:  212 DFENARILITDKKISSIQDLVPVLEKVARAGQSLLIIAEDIEGEALATLVVNKARGVLNVAAVKAPGFGDRRKAMLQDIAILTGGQLISEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIV 443          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.169e-67
Identity = 131/232 (56.47%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            E EN +LL+V+KKI++ +DL+ +LE   R   P+LIIAED+E EALATLVVNKLRG L + A+KAPGFGER+   L DIA+LTGG VI ++VGL LDKV  E+LG A KV ++KD TTIV + +    V KRV Q+R  ++  + +Y++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+  ++++K  L  DE KVGAD+V
Sbjct:  212 EIENARLLIVNKKISSLQDLVGILEQVARAGQPLLIIAEDLEGEALATLVVNKLRGVLNVVAIKAPGFGERRQAMLQDIAVLTGGQVISEDVGLTLDKVDLEMLGTARKVTISKDNTTIVSEAANAGDVGKRVEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQL-KDEEKVGADLV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 130/232 (56.03%), Postives = 169/232 (72.84%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            E EN ++L+ DKKI++ ++L+ VLE   R   P+LIIAED+E +ALATLVVNK RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+  D +E K+GADIV
Sbjct:  212 ELENVRILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 130/232 (56.03%), Postives = 169/232 (72.84%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            E EN ++L+ DKKI++ ++L+ VLE   R   P+LIIAED+E +ALATLVVNK RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+  D +E K+GADIV
Sbjct:  212 ELENVRILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 133/232 (57.33%), Postives = 169/232 (72.84%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADIV 696
            EYEN  LL+   K++N +DL+ VLE   R   P+L+IAED+E EALATLVVNKLRG L   A+KAP FG+R+   L+DIAILTGG +I +++G+ L+ V  +++G A K+ +TKD TTIV DGST+ AV KRVAQIR  +E  + +Y+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AA           TLL LS  + A K  L N E +VGADIV
Sbjct:  213 EYENAYLLITSNKLSNLQDLVPVLERVAREGRPLLVIAEDVEGEALATLVVNKLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQLISEDIGIKLENVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVGADIV 443          
The following BLAST results are available for this feature:
BLAST of FC930513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH4.470e-10586.21RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA6.455e-10485.34RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA1.217e-10284.48RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE1.346e-10183.19RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE9.690e-8467.24RuBisCO large subunit-binding protein subunit beta... [more]
CH601_TRIEI6.742e-6956.9060 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_ACAM12.169e-6756.4760 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_ANAVT5.342e-6656.0360 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP5.342e-6656.0360 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH601_SYNJA5.342e-6657.3360 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]

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Properties
Property NameValue
Genbank descriptionC34008D03EF PostHarvC1 Citrus clementina cDNA clone C34008D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930513 ID=FC930513; Name=FC930513; organism=Citrus clementina; type=EST; length=698bp
GAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGC
AAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAA
TTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTC
GTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGG
TTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTG
GAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGC
AAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCAC
CACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGG
CGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAG
AAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACA
GGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCG
AAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTT
GGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAA
GGAAACCCTTGATAATGATGAAAGAAAGGTTGGAGCAGATATTGTTAA
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