FC930539

Overview
NameFC930539
Unique NameFC930539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 6.023e-92
Identity = 168/203 (82.76%), Postives = 186/203 (91.63%), Query Frame = 2
Query:  116 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+MGEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVL+PYS+EDARGLLKAAIRDPDPVVF
Sbjct:    1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVF 202          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.895e-86
Identity = 166/203 (81.77%), Postives = 175/203 (86.21%), Query Frame = 2
Query:  116 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            M G+IR K           IRP  S  R +SSA KQM VR+ALNSALD EMSAD KVFLMGEEVGEYQGAYK++KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS+GQISVPIVFRG NG AAGVGAQHS CYA+WY S PGLKVL P+S+EDARGLLKAAIRDPDPVVF
Sbjct:    1 MLGVIRNKT----------IRPSFSAFRFFSSA-KQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVF 192          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.222e-68
Identity = 123/172 (71.51%), Postives = 149/172 (86.63%), Query Frame = 2
Query:  206 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVV 721
            S+ VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTPITE GFTG+  GAA+ GL+P+ EFMTFNFSMQAIDHI+NSAA++ YMS G  + PIVFRGPNG AA V AQHSQ +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV
Sbjct:   32 SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVV 203          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.556e-68
Identity = 125/189 (66.14%), Postives = 152/189 (80.42%), Query Frame = 2
Query:  158 SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            +P + +RP  +      S+ K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+SKGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEFM+FNFSMQAIDH++NSAAK++YMS G     +VFRGPNGAA GVGAQHSQ ++ WY S+PGLKVL PYS+EDARGLLKAAIRDP+PVVF
Sbjct:   17 APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVF 205          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.706e-67
Identity = 117/171 (68.42%), Postives = 148/171 (86.55%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            A K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAYKI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EFMTFNF+MQAIDHIINS+AK++YMS G++  PIV+RGPNG    VGAQHSQC+AAWY SVPGLKV++P+S+ D RGLLK+AIRD +PVV+
Sbjct:   25 ATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVY 195          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.144e-66
Identity = 123/171 (71.93%), Postives = 145/171 (84.80%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            A   M VR+ALN A+DEE+  D +VFLMGEEV +Y GAYKISKGL +K+G +RV+DTPITE GF GI VGAA+ GL+P+ EFMTFNFSMQAID IINSAAK+ YMS+G++ VPIVFRGPNGAAAGV AQHSQ ++AWYA  PGLKV+ PYS+EDA+GLLKAAIRD +PVVF
Sbjct:   21 AASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVF 191          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.652e-65
Identity = 118/167 (70.66%), Postives = 143/167 (85.63%), Query Frame = 2
Query:  224 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            M VREAL  A+ EEM A+  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE GF G+GVGAA  GL+P+VEFMTFNF+MQAID IINSAAK+ YMS GQ+  PIVFRGP+GAAA V AQHSQCYAAWY+ +PGLKV+ PY++ DA+GLLKAAIRDP+PV+F
Sbjct:  138 MTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIF 304          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 8.198e-65
Identity = 117/170 (68.82%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVV 721
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G  SVPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP+SSEDA+GL+K+AIRD +PVV
Sbjct:   29 AALQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVV 198          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.115e-64
Identity = 115/170 (67.65%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVV 721
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS+G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV
Sbjct:   29 AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVV 198          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 115/170 (67.65%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  212 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVV 721
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS+G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV
Sbjct:   29 AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVV 198          
The following BLAST results are available for this feature:
BLAST of FC930539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_ARATH6.023e-9282.76Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA2.895e-8681.77Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO1.222e-6871.51Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST3.556e-6866.14Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI6.706e-6768.42Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL1.144e-6671.93Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME1.652e-6570.66Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BOVIN8.198e-6568.82Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT3.115e-6467.65Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE4.068e-6467.65Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionC34008F05EF PostHarvC1 Citrus clementina cDNA clone C34008F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930539 ID=FC930539; Name=FC930539; organism=Citrus clementina; type=EST; length=725bp
GATTCGTGCTCTTCGTGTGGGCTGTGCGTTGCAACTTTCAACCTATTTCC
CTCTCCACGGCGATCGGATCGCTGATAACTTTCACTTCTGGATTTTCATT
GAAACAGAGTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGG
AGGAGGTTCTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAA
ACTACTCATCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCT
GCTCTTGATGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGA
AGAGGTTGGGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGG
AGAAATATGGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGT
TTTACTGGGATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGT
GGAATTCATGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTA
ATTCTGCTGCAAAATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCT
ATTGTCTTCAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACA
CTCTCAATGTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTAC
TGAGCCCATACAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATA
AGGGATCCGGATCCTGTTGTTTTTC
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