FC930607

Overview
NameFC930607
Unique NameFC930607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 69/200 (34.50%), Postives = 89/200 (44.50%), Query Frame = 1
Query:   70 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAVFFD--------YESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTN-----RXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            MATP E SAL  I+++L  E SP+                          + ND   FD        +E+KP+IIDLVTP+P         + F+FD++ +I S+ SN S  F+                       P + +   F                    HYRGVR RPWGK+AAEIRDPTRRG RVWLGTF+T
Sbjct:    1 MATPNEVSALFLIKKYLLDELSPLP------------------TTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKP---------EIFDFDVKSEIPSE-SNDSFTFQSNPPRVTVQSNRKPPLKIAP---PNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFET 169          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 68/195 (34.87%), Postives = 85/195 (43.59%), Query Frame = 1
Query:   70 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAV----FFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQS---QPSNCS-SEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTNRXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            MATP E SAL FIE+HL  E SP+A                           + +     F +   KP+IIDL TP+      E  +  FEFD    +     +PSN + ++FE                      +   AE    T              HYRGVR+RPWGK+AAEIRDP +RG RVWLGTFDT
Sbjct:    1 MATPNEVSALWFIEKHLLDEASPVATDPWMKHESSSATESSSDSSSIIFGSSSSSFAPIDFSESVCKPEIIDLDTPRSM----EFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAEN---TKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDT 188          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            HYRGVRRRPWGKYAAEIRDP ++GVRVWLGTFDT
Sbjct:   71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDT 104          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT
Sbjct:  144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDT 177          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT
Sbjct:  137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDT 170          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            HYRGVRRRPWGKYAAEIRDP ++G R+WLGT+DT
Sbjct:   87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDT 120          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            YRGVR+RPWGK+AAEIRD TR+G+RVWLGTFDT
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDT 114          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            HYRGVRRRPWGK+AAEIRDP + G RVWLGT++T
Sbjct:  104 HYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYET 137          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T
Sbjct:  116 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET 149          
BLAST of FC930607 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 630
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET 180          
The following BLAST results are available for this feature:
BLAST of FC930607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
EF103_ARATH1.082e-1834.50Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF102_ARATH7.756e-1734.87Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF105_ARATH5.202e-1391.18Ethylene-responsive transcription factor ERF105 OS... [more]
ERF5_TOBAC5.752e-1285.29Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY5.752e-1285.29Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF104_ARATH5.752e-1282.35Ethylene-responsive transcription factor ERF104 OS... [more]
ERF94_ARATH3.728e-1184.85Ethylene-responsive transcription factor ERF094 OS... [more]
ERF1_TOBAC4.869e-1179.41Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF101_ARATH6.359e-1179.41Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH6.359e-1179.41Ethylene-responsive transcription factor 1A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC34009D02EF PostHarvC1 Citrus clementina cDNA clone C34009D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930607 ID=FC930607; Name=FC930607; organism=Citrus clementina; type=EST; length=694bp
GAATCTCAAAACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGA
CACAGCTTGCTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCG
AGTTTATCGAGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTT
AGTTCGAGTTTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTC
TGCATCTTCAGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATG
AATCCAAACCTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACT
TGCTCTGAATTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAAT
CCAATCGCAACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAA
TATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATC
TCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAA
GGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGA
GGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGC
GTACGTGTCTGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTAGGGC
GTACGACCGTGCCGCTTTCCGCTGCGCGGCTCGAAAGCGATCCT
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