FC930738
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1) HSP 1 Score: 337.035 bits (863), Expect = 4.974e-92 Identity = 165/224 (73.66%), Postives = 179/224 (79.91%), Query Frame = 1 Query: 49 DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVT----------------VDRSMISDNVVVSTPYR--------DTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLP 648 D+L+GTTVK+RLGP+KGYRG VV+VKG SVRVELE MK+VT + + S ++ Y+ DT RY MGSETPMHPSRTPLHPYMTPMRD+GATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG+YSDAGTPRD S Y NAPSPYLPSTP GQPMTP+SASYLP Sbjct: 700 DSLLGTTVKIRLGPFKGYRGPVVEVKGNSVRVELE--MKIVTGKPLNSLLRVWVSTCRTNSNNSSYMQLIGVQYQIMLRQHRLDTSRYSMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTP-GQPMTPSSASYLP 920
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 5.731e-64 Identity = 134/217 (61.75%), Postives = 151/217 (69.59%), Query Frame = 1 Query: 49 DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVT----VDRSMISD---NVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGW-ASTPG-GNYSDAGTPRDSSSTY------VNAPSP-------YLPSTPGGQPMTPNS 633 D LVGT VK+RLGP+KGY GR+V+VK + VRVELE+ K+VT +R ISD NVV TP+Y MGS+TPMHPSRTPLHP MTPMR +GATPIHDGMRTPMR RAWNPY PMSPPRDNWEDGNPGSWGTSP YEA TPGS W +STPG +Y DAGTP ++ Y NAPSP YLP+TPGGQ MTP + Sbjct: 683 DHLVGTYVKIRLGPFKGYSGRLVEVKDKLVRVELEA--KIVTGKLHFERKAISDMTDNVVA------TPQYNMGSQTPMHPSRTPLHPCMTPMRHSGATPIHDGMRTPMRGRAWNPYMPMSPPRDNWEDGNPGSWGTSP-----------YEAATPGSDWGSSTPGRSSYRDAGTPINNGFVYYLLCLNANAPSPMTPSSTSYLPTTPGGQAMTPGT 880
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_CHICK (Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.292e-23 Identity = 75/211 (35.55%), Postives = 102/211 (48.34%), Query Frame = 1 Query: 55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----------NVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPY-LPSTPGGQPMTPNSASY 642 L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++ + TP TP YG GS TPM+ S+TPLH TP+HDG RTP + AW+P P +P R +++E G SPQ G+P + P P S + P N GTP ++ SPY +PS G +P+ SY Sbjct: 697 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPSSPQVTQP-YNPQTPGTPAMYNTDQF---SPYAVPSPQGSYQPSPSPQSY 903
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_DANRE (Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.372e-23 Identity = 83/255 (32.55%), Postives = 110/255 (43.14%), Query Frame = 1 Query: 55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS----------DNVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSP--PRDNWE---DGNP-----GSWGT----------------SPQYQPGSPPSRA---------YEAPTPGSGWASTPGGNYSDAGTP-------RDSSSTYVNAPSPYL------PSTPGGQPMTPNSAS 639 L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++ + + TP TP YG GS TPM+ S+TPLH TP+HDG RTP + AW+P P +P P D +E D P G GT +PQY P +P + A Y AP+P + +P P S ++Y PSP PS G PMTP + S Sbjct: 703 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGGKERQGRSSTHLRTPMYGSQTPIYGTGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDDEYEFAYDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPS 957
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_PONAB (Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.428e-22 Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1 Query: 55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----------NVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTP----RDSSSTYVNAPSP---YLPS-----------TPGGQPMTPNSASYLP 648 L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++ + TP TP YG GS TPM+ S+TPL TP+HDG RTP + AW+P P +P R + +E SPQ G+P + P P S + P N GTP D S Y APSP Y PS +P G T + ASY P Sbjct: 701 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHP 928
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_MOUSE (Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.428e-22 Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1 Query: 55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----------NVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTP----RDSSSTYVNAPSP---YLPS-----------TPGGQPMTPNSASYLP 648 L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++ + TP TP YG GS TPM+ S+TPL TP+HDG RTP + AW+P P +P R + +E SPQ G+P + P P S + P N GTP D S Y APSP Y PS +P G T + ASY P Sbjct: 699 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVDSQRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHP 926
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_HUMAN (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.428e-22 Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1 Query: 55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----------NVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTP----RDSSSTYVNAPSP---YLPS-----------TPGGQPMTPNSASYLP 648 L+G TV++ GPYKGY G V D + RVEL S + ++VDR ++ + TP TP YG GS TPM+ S+TPL TP+HDG RTP + AW+P P +P R + +E SPQ G+P + P P S + P N GTP D S Y APSP Y PS +P G T + ASY P Sbjct: 705 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHP 932
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_DROME (Transcription elongation factor SPT5 OS=Drosophila melanogaster GN=Spt5 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19 Identity = 75/217 (34.56%), Postives = 102/217 (47.00%), Query Frame = 1 Query: 55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMI----------SDNVVVSTPYRDTPRYG--------MGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSP---PSRAYEAPTPGSGWASTPG---GNYSDAGTPRDSSSTYVNAPSP--YLPSTPGGQPMTP 627 ++G T+K+ GPYKG G V D + RVEL + + ++VDR+ I S + TP R TP YG GS+TP+ S+TP T TP HDG TP R AW+P +P R+N D + SP Y P +P + + TPG+ + S N S + P Y+N PSP Y P+TPGG P +P Sbjct: 741 ILGKTIKISGGPYKGAVGIVKDATESTARVELHTSCQTISVDRNHIAIVGVTGKEGSVSTYGRTPAR-TPGYGAQTPSYTAAGSKTPLVGSQTPNWDTDTRTPYGTMTPSHDGSMTP-RHGAWDPTANTTPARNNDFDYSLEEPSPSPGYNPSTPGYQMTSQFAPQTPGTLYGSDRSYSPFNPSPSPAPSPYPVGYMNTPSPSTYSPNTPGGIPQSP 955
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_CAEEL (Transcription elongation factor SPT5 OS=Caenorhabditis elegans GN=spt-5 PE=2 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 2.441e-14 Identity = 69/212 (32.55%), Postives = 96/212 (45.28%), Query Frame = 1 Query: 55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRS---MISDNVVVS-------------TPYRD---TPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIH-DGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPN 630 L+G V++ GP KG+ G V D +VRVEL +Q + ++VDR+ ++ D + + TP RD TP Y GS+TPM+ ++TP++ MTP D G TP + +G RTP A+ TP D ++G P A A TP G ST GG G+ D+S T S P TPN Sbjct: 731 LIGKNVRIIKGPMKGHFGIVRDATEDTVRVELHTQCRTISVDRARVMVVGDTGITAGSGGGSSFYSSSKTPMRDSGKTPMY--GSKTPMYGAQTPMYGSMTPAYDGGRTPAYGEGGRTP----AYGSKTPAYGDLDEHSSSRTPAYGNDSSRTPAY--GSADGARTPAYG--STEGGRTPAYGS-MDNSRTPAYDDSGRTPGYESMPSRTPN 931 The following BLAST results are available for this feature:
BLAST of FC930738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930738 ID=FC930738; Name=FC930738; organism=Citrus clementina; type=EST; length=648bpback to top |