FC930784

Overview
NameFC930784
Unique NameFC930784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14404 contig Ccv1_Contig14404:16..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: GRSF1_MOUSE (G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 55/171 (32.16%), Postives = 78/171 (45.61%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFF 672
            VVRLRGLP+ C E D+ +FF GL+IVD+ FV  ++  + TGEA+     P   + AL ++R+ +G RY+E+F S+R E    + +        SP                              + I   K   E    AV  G L       +RGLPF A   DI++FF
Sbjct:  250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFF 420          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: GRSF1_HUMAN (G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 54/173 (31.21%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY------YKA-----------------------IANEVSDVRGGSPHRSIPRAK--------SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VVRLRGLP+ C E D+ +FF GL+IVD+ FV  ++  + TGEA+     P   + AL ++R+ +G RY+E+F S+R E       YK                        +  ++  +      + I   K        + D G  S++H   + +RGLPF A   DI++FF
Sbjct:  251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFF 421          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP2_RAT (Epithelial splicing regulatory protein 2 OS=Rattus norvegicus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 52/141 (36.88%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            VVR RGLP+  ++ DVA FF GL+I      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  D++DF    C
Sbjct:  247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPADVLDFLGPEC 371          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP2_MOUSE (Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            VVR RGLP+  ++ DVA FF GL+I      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  D++ F    C
Sbjct:  248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPEC 372          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP2_HUMAN (Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            VVR RGLP+  ++ DVA FF GL++      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  D++ F    C
Sbjct:  258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPEC 382          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  LG    V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  LG    V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP2_CHICK (Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            V+R RGLP+  ++ D+A FF GL+I      L ++   +  GEA        Q D AL+R++ +MG RY+EV+++  +E+ K        + GG+ +       +    K++ V   I+R+RGLPF+A ++D++ F    C
Sbjct:  227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------IAGGTSNE-----VAQFLSKENQV---IIRMRGLPFTATQEDVLGFLGPEC 351          
The following BLAST results are available for this feature:
BLAST of FC930784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GRSF1_MOUSE1.172e-1532.16G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 ... [more]
GRSF1_HUMAN4.453e-1531.21G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 ... [more]
ESRP2_RAT3.770e-1436.88Epithelial splicing regulatory protein 2 OS=Rattus... [more]
ESRP2_MOUSE2.444e-1336.17Epithelial splicing regulatory protein 2 OS=Mus mu... [more]
ESRP2_HUMAN3.192e-1335.46Epithelial splicing regulatory protein 2 OS=Homo s... [more]
HNRPF_MACFA4.168e-1336.69Heterogeneous nuclear ribonucleoprotein F OS=Macac... [more]
HNRPF_HUMAN4.168e-1336.69Heterogeneous nuclear ribonucleoprotein F OS=Homo ... [more]
HNRPF_RAT4.609e-1235.97Heterogeneous nuclear ribonucleoprotein F OS=Rattu... [more]
HNRPF_MOUSE4.609e-1235.97Heterogeneous nuclear ribonucleoprotein F OS=Mus m... [more]
ESRP2_CHICK4.609e-1231.91Epithelial splicing regulatory protein 2 OS=Gallus... [more]

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Properties
Property NameValue
Genbank descriptionC34109A05EF PostHarvP1 Citrus clementina cDNA clone C34109A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930784 ID=FC930784; Name=FC930784; organism=Citrus clementina; type=EST; length=714bp
GAAGAAGCTCGAAGAAACACAAAGATTAAGAAATAAACAAGGGTTAAAAA
AAAAAAAAAAAATTTGGATAGCTCACGGCTCAACTATTTCAAATTTAAGA
ATGTTCTACAGAGGCAAGTTTGCTGAGGGTGCTGATGGGCGTGAAATGGG
GGCAAAGCGTCAACGGTTGATTGATCAGGGACCTTCATTTCTGGAACTCC
CCCAAGTTCAAGTTTTATGTACAATCCACCACCAGCTTATGGGTACGTTA
GCCAACCTCCACCTTTCCCAGTTGTCCGACTTCGCGGTCTTCCCTTTGAT
TGTACAGAAGTTGATGTTGCTGAGTTTTTCCATGGTCTAGACATAGTCGA
TGTTCTTTTTGTCCATAAGAACAACAAATTTACAGGAGAAGCTTTTTGTG
TGCTGGGGTATCCTCTTCAAGTCGATTTTGCCCTGCAGAGGAATAGGCAG
AACATGGGAAGGAGGTATGTTGAGGTTTTCAGAAGTAAGAGGCAGGAATA
TTATAAGGCAATAGCAAATGAAGTTTCTGATGTTCGTGGTGGTTCACCAC
ATAGGAGTATCCCTAGGGCTAAATCTCATGATGAGGGGAAGGATTCAGCT
GTACATACAGGGATACTGCGATTGAGAGGATTGCCATTTTCAGCAGGCAA
GGATGACATAATGGATTTCTTTAAGATTTTGTGTTGTCGGAAGACTCGAT
TCATATTACTATGA
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