FC930785

Overview
NameFC930785
Unique NameFC930785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.142e-88
Identity = 158/236 (66.95%), Postives = 192/236 (81.36%), Query Frame = 3
Query:    3 PSADLVSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAK-HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            PS DLV+EISRVLSDHR+P  DLE +L  ++PR+S+NLVEQVLKRCKNLGF AHRFFLWA+RIP F HS  SYHILV+ILGS+KQFALLWDFLIE RE   FEI+ ++FWIV RAY+RANLP++A RAFNRMVEFGIKP + DLDQLLH+LC +KHV  A +FF  AK     P+ KTYSILVRG   + + S ARK+FDEMLER C VD+LA+N+LL+A+CK+G++D  + M +E
Sbjct:   33 PSPDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQE 268          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.021e-43
Identity = 90/236 (38.14%), Postives = 146/236 (61.86%), Query Frame = 3
Query:    9 ADLVSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECVP 716
            AD+   IS+VL     P   L+ +L+    R+S  +VE VL R +N G   +RFF W+++   +EHS  +YH++++     +Q+ L+WD +  +R+ +   +N E F IV+R YARA   ++AI AFN M ++ + P++   + LL ALCK K+V+ A + F+N +  FTP  KTYSIL+ G G    L +AR++F EM++  C  DI+ ++ +++ +CKAG +DEA G++R   P
Sbjct:   69 ADVAKNISKVLMS--SPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKM--LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDP 300          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.292e-32
Identity = 74/230 (32.17%), Postives = 126/230 (54.78%), Query Frame = 3
Query:   18 VSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            V +I R+L +H      LEL+LN     +   L+ +VL RC + G   +RFFLWA + PG+ HS      +V IL   +QF  +W  + E+R+     I PE+F +++R +A AN+   A+   + M ++G++P  Y    LL ALCK   VK A + F++ + +F P ++ ++ L+ G    G+L EA+++  +M E     DI+   +LL     AG + +A+ ++ +
Sbjct:   67 VEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMND 296          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 73/230 (31.74%), Postives = 123/230 (53.48%), Query Frame = 3
Query:   18 VSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            V +  R+L         LEL+LN     +   L+E+VL RC + G   +RFF+WA + P + HS   Y  +V IL   +QF  +W  + E+R+     I PE+F ++++ +A A++   AI   + M +FG +P  Y    LL ALCK   VK A + F++ +  F   ++ ++ L+ G   VG++ EA+ +  +M E     DI+ + +LL     AG + +A+ +LR+
Sbjct:   83 VEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRD 312          

HSP 2 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 48/177 (27.12%), Postives = 79/177 (44.63%), Query Frame = 3
Query:  195 GFEHSAGSYHILVDIL---GSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECV 713
            GFE     +  L+D L   GS K  A L++ +        F +N   F  +L  + R     +A     +M E G +P I D   LL        +  A+    D  +  F P    Y++L++ L  V  + EA K+F EM   +C  D++ + +L+   CK G ID+ + +L + +
Sbjct:  213 GFEPDEYVFGCLLDALCKHGSVKDAAKLFEDM-----RMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMI 384          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 74/222 (33.33%), Postives = 124/222 (55.86%), Query Frame = 3
Query:   27 ISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            I ++L+   D    +E  LN  + ++S  L+E+VLK+  N G  A   F WA+   GF+H+  +Y+ L++ LG  KQF L+W  + +++  +   ++ E F ++ R YARA    +AI AF++M EFG K    D +++L  L K ++V  A + FD  K + F P +K+Y+IL+ G G    L    ++  EM +     D++A+  ++ A CKA   +EA
Sbjct:   69 ICKILTKFTDSK--VETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL--LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEA 286          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 71/222 (31.98%), Postives = 123/222 (55.41%), Query Frame = 3
Query:   63 HDLELSLNTF-TPRISTNLVEQVLKRCKNL--GFSAHR---FFLWAKRIPGFEH-SAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            H L L  +   T ++S ++V  V+++C ++  G   H+   FF WA     ++H S   Y+ ++D+ G  +QF L W  LI++ ++++ EI+ E F I++R Y RA L ++A+  FNRM ++G  P       ++  L +++    A  FFD+ K  F P V  Y+ LVRG    GE+SEA K+F EM       ++  ++ +++A+C+ G I  AH +  +
Sbjct:   95 HALSLDFSQIETSQVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWH-LIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.938e-25
Identity = 65/232 (28.02%), Postives = 119/232 (51.29%), Query Frame = 3
Query:   18 VSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFE-INPEIFWIVLRAYARANLPNDAIRAFNRMVE-FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            + ++   L+     H D+   L+     ++ +LV QVL+R  N    A+ FF+WA    G+ HS  +Y+ +VD+LG  + F L+W+ + E+ +N+  + +  +    V+R  A++   N A+ AF  M + +G+K     ++ L+ AL K   ++ AH+ F        P  +T++IL+ G     +  +AR + D M   +   D++ + S +EA CK G+    + ML E
Sbjct:  102 IDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEE 333          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 65/224 (29.02%), Postives = 117/224 (52.23%), Query Frame = 3
Query:   18 VSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            V  + +V+ +      ++E  L+     +S +L+ +VL+R ++    A RFF WA    GF H + +Y+ ++ IL  T+QF  +   L E+       +  E F I ++A+A A     A+  F  M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L EA +++++M+++    DI+AHN +LE + ++    +A
Sbjct:  131 VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTM--ETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDA 352          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 64/218 (29.36%), Postives = 115/218 (52.75%), Query Frame = 3
Query:   18 VSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 671
            V  + +V+ +      ++E  L+     +S +L+ +VL+R ++    A RFF WA    GF H++ +Y+ ++ IL  T+QF  +   L E+       +  E F I ++A+A A     A+  F  M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L EA +++++M++     DI+AHN +LE + ++
Sbjct:  131 VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTM--ETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRS 346          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 64/218 (29.36%), Postives = 114/218 (52.29%), Query Frame = 3
Query:   18 VSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 671
            V  + +V+ +      ++E  L+     +S +L+ +VL+R ++    A RFF WA    GF H + +Y+ ++ IL  T+QF  +   L E+       +  E F I ++A+A A     A+  F  M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L EA +++++M++     DI+AHN +LE + ++
Sbjct:  130 VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTM--ETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRS 345          
The following BLAST results are available for this feature:
BLAST of FC930785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PPR78_ARATH9.142e-8866.95Pentatricopeptide repeat-containing protein At1g52... [more]
PP129_ARATH4.021e-4338.14Pentatricopeptide repeat-containing protein At1g77... [more]
PP275_ARATH9.292e-3232.17Pentatricopeptide repeat-containing protein At3g49... [more]
PP447_ARATH1.483e-2931.74Putative pentatricopeptide repeat-containing prote... [more]
PP112_ARATH4.316e-2933.33Pentatricopeptide repeat-containing protein At1g71... [more]
PPR54_ARATH3.654e-2831.98Pentatricopeptide repeat-containing protein At1g20... [more]
PP248_ARATH4.938e-2528.02Pentatricopeptide repeat-containing protein At3g22... [more]
PP293_ARATH7.884e-2329.02Pentatricopeptide repeat-containing protein At3g62... [more]
PP294_ARATH1.030e-2229.36Pentatricopeptide repeat-containing protein At3g62... [more]
PP382_ARATH1.345e-2229.36Pentatricopeptide repeat-containing protein At5g14... [more]

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Properties
Property NameValue
Genbank descriptionC34109A06EF PostHarvP1 Citrus clementina cDNA clone C34109A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930785 ID=FC930785; Name=FC930785; organism=Citrus clementina; type=EST; length=733bp
GACCATCAGCAGACCTTGTTAGCGAAATTTCCCGCGTTTTAAGCGACCAC
AGGGACCCCCACCACGACTTGGAACTTTCCCTCAATACATTCACTCCAAG
AATATCCACAAACTTAGTTGAACAAGTCTTAAAAAGGTGCAAGAATCTTG
GGTTCTCCGCTCACAGATTCTTTCTTTGGGCCAAAAGAATCCCTGGTTTT
GAACACAGTGCTGGTAGCTATCACATTTTGGTGGATATATTAGGAAGTAC
CAAGCAGTTTGCTTTATTATGGGATTTTTTGATAGAGATTAGGGAGAATC
AGTCTTTTGAAATAAACCCAGAAATTTTTTGGATTGTTCTTAGAGCTTAT
GCTAGAGCTAACTTACCTAATGATGCCATTAGGGCTTTTAATAGAATGGT
AGAGTTTGGTATTAAGCCTAGCATTTATGATCTTGATCAGCTGTTGCATG
CTTTGTGCAAAAGAAAGCATGTGAAGGTTGCCCATCAATTTTTTGACAAT
GCTAAGCATGAATTTACTCCAACTGTGAAAACCTATAGCATTTTGGTGAG
GGGGCTGGGTGATGTTGGTGAGTTGAGTGAAGCGCGTAAGTTGTTCGATG
AAATGCTTGAGAGAAAATGTCCGGTTGATATTCTTGCGCATAATAGTCTA
TTGGAAGCTATGTGCAAAGCGGGTAATATTGATGAAGCGCATGGAATGCT
TAGAGAATGCGTTCCATTGGAGCTGAGCAGATG
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