FC930806

Overview
NameFC930806
Unique NameFC930806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930806_ssr10 microsatellite FC930806_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930806_ssr53 microsatellite FC930806_ssr53:53..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7906 contig Ccv1_Contig7906:79..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.048e-90
Identity = 161/194 (82.99%), Postives = 171/194 (88.14%), Query Frame = 2
Query:   74 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655
            MVSGSGIC+KRVVVDARHHMLGRLASI AKELLNGQKVV VRCEEIC+SGGLVRQK+KYMRFLRKRMNTKPS GPIHFRAP+KIFWRTVRGMIPHKT            YEGVP PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKER+ V YERKKQL +LR KAEKVAEE L
Sbjct:    1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKL 194          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.182e-89
Identity = 158/194 (81.44%), Postives = 172/194 (88.66%), Query Frame = 2
Query:   74 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655
            MVSGSGICAKRVVVDARHHMLGRLAS+VAK+LLNGQ +V VRCEEIC+SGGLVRQK+KYMRFLRKRMNTKPS GPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDK+KRMV+PDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKER+Q  YERKKQL +LRAKAEKVAEE L
Sbjct:    1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKL 194          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.438e-89
Identity = 161/194 (82.99%), Postives = 171/194 (88.14%), Query Frame = 2
Query:   74 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655
            MVSGSGIC+KRVVVDARHHM GRLASI+AKELLNGQ VV VRCEEIC+SGGLVRQK+KYMRFLRKRMNTKPS GPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDKVKRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKERSQ  YERKKQL +LRAKAEKVAEE L
Sbjct:    1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKL 194          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.000e-88
Identity = 159/194 (81.96%), Postives = 170/194 (87.63%), Query Frame = 2
Query:   74 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655
            MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VV VRCEEIC+SGGLVRQK+KYMRFLRKRMNTKPS GPIHFRAP+KIFWRTVRGMIPHKT            +EG+P PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKERSQV YERKKQL +LR KAEKVAEE L
Sbjct:    1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERL 194          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.710e-85
Identity = 156/194 (80.41%), Postives = 170/194 (87.63%), Query Frame = 2
Query:   74 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655
            MVSGSGI AKRVVVDARHHMLGRLASIVAKELLNGQKVV VR EEIC+SGGLVRQK+KY+RFLRKRMNTKPS GPIH  AP+KIFWRTVRGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+L+SEVGWNYYDTI+ELEKKRKERSQV YERKKQL +LR KAE+VA+E L
Sbjct:    1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKL 193          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.117e-82
Identity = 146/195 (74.87%), Postives = 170/195 (87.18%), Query Frame = 2
Query:   74 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLA 658
            MVSGSGICAK VVVDARHHMLGRLASI+AKELL+GQ+VV VRCEEICMSGGLVRQK+KY+RFLRKRMNTKPS GPIHFRAP++I WRT+RGMIPHKT            +EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRL+ EVGW+++DTI ELE+KRK ++QV+YER+KQL +LR+KA ++AE+ LA
Sbjct:    1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLA 195          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.840e-58
Identity = 111/177 (62.71%), Postives = 133/177 (75.14%), Query Frame = 2
Query:  101 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKA 631
            K VVVD R H+LGRLA+ +AKELLNGQ+VVAVR EEI +SG L R K+K+  FL+KRMNT P RGP HFR+PA+I WRT+RGMIPHKT            +EGVP PYDK+KRMVIP AL+VLRL+ G K+C+LGRLA+EVGW + D +  LE+KRK +S   Y RKK L  LRAKA
Sbjct:    4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKA 180          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.722e-56
Identity = 105/185 (56.76%), Postives = 136/185 (73.51%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLAR 661
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+ + +
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGK 191          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.249e-56
Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+ +
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKI 189          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.249e-56
Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+ +
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKI 189          
The following BLAST results are available for this feature:
BLAST of FC930806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
R13A4_ARATH9.048e-9082.9960S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH1.182e-8981.4460S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A2_ARATH3.438e-8982.9960S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
R13A3_ARATH1.000e-8881.9660S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
RL13A_LUPLU6.710e-8580.4160S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PICMA3.117e-8274.8760S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_CYAPA1.840e-5862.7160S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_BOVIN1.722e-5656.7660S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_MACFA2.249e-5657.3860S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN2.249e-5657.3860S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109C03EF PostHarvP1 Citrus clementina cDNA clone C34109C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930806 ID=FC930806; Name=FC930806; organism=Citrus clementina; type=EST; length=699bp
GGAGAGAGGGAGAGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAA
ATAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCG
AAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTC
GATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCT
GCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAGTGAAGTAC
ATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCGCGGTCCCAT
CCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGA
TACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCA
TATGAAGGGGTCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCC
CGACGCTCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGT
TAGGTCGCCTGGCATCTGAGGTTGGATGGAATTATTATGACACCATCAGG
GAGCTTGAGAAGAAGAGAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAA
GAAGCAGCTCAAACAACTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGA
ACTTGGCTCGCAATTGGACATCCTTGCTCCTGTCAATATTGATCAGTTA
back to top