FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930813_ssr264 microsatellite FC930813_ssr264:264..275. BLAST: Citrus ESTs to TAIR9
Homology
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CITSI (Photosystem I assembly protein ycf3 OS=Citrus sinensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.099e-17
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_VITVI (Photosystem I assembly protein ycf3 OS=Vitis vinifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_RANMC (Photosystem I assembly protein ycf3 OS=Ranunculus macranthus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PANGI (Photosystem I assembly protein ycf3 OS=Panax ginseng GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_OENEH (Photosystem I assembly protein ycf3 OS=Oenothera elata subsp. hookeri GN=ycf3 PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_NANDO (Photosystem I assembly protein ycf3 OS=Nandina domestica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_LEMMI (Photosystem I assembly protein ycf3 OS=Lemna minor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_LACSA (Photosystem I assembly protein ycf3 OS=Lactuca sativa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_JASNU (Photosystem I assembly protein ycf3 OS=Jasminum nudiflorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_IPOPU (Photosystem I assembly protein ycf3 OS=Ipomoea purpurea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_CITSI7.099e-17100.00Photosystem I assembly protein ycf3 OS=Citrus sine... [more]
YCF3_VITVI3.523e-1697.62Photosystem I assembly protein ycf3 OS=Vitis vinif... [more]
YCF3_RANMC3.523e-1697.62Photosystem I assembly protein ycf3 OS=Ranunculus ... [more]
YCF3_PANGI3.523e-1697.62Photosystem I assembly protein ycf3 OS=Panax ginse... [more]
YCF3_OENEH3.523e-1697.62Photosystem I assembly protein ycf3 OS=Oenothera e... [more]
YCF3_NANDO3.523e-1697.62Photosystem I assembly protein ycf3 OS=Nandina dom... [more]
YCF3_LEMMI3.523e-1697.62Photosystem I assembly protein ycf3 OS=Lemna minor... [more]
YCF3_LACSA3.523e-1697.62Photosystem I assembly protein ycf3 OS=Lactuca sat... [more]
YCF3_JASNU3.523e-1697.62Photosystem I assembly protein ycf3 OS=Jasminum nu... [more]
YCF3_IPOPU3.523e-1697.62Photosystem I assembly protein ycf3 OS=Ipomoea pur... [more]

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Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
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