FC930832

Overview
NameFC930832
Unique NameFC930832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig525 contig Ccv1_Contig525:125..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.836e-94
Identity = 150/204 (73.53%), Postives = 174/204 (85.29%), Query Frame = 3
Query:  102 KALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTT----LPHFSQVY*SYITI 701
            +ALKCKEPPS +RLAAMQ+LFEVCPCFKFGF+AANGAI+EA KGE+ VHIIDFDINQG+QY+TLI++IA LPG RP LRLTG+DDPESVQR +GGL+IIGLRLE LAE  GV F+F A+PSKTS+V+PS L C+ GE L+VNFAFQLHHMPDESV+TVNQRD+LL MVKSLNPKLVTVVEQD+NT      P F + Y  Y  +
Sbjct:  283 RALKCKEPPSDERLAAMQVLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAV 486          

HSP 2 Score: 61.6178 bits (148), Expect = 1.836e-94
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 2
Query:    2 RQMVSIQGDPPQRIAAYMVEGLAARMAASGKFL 100
            RQ+VSIQGDP QRIAAYMVEGLAARMAASGKF+
Sbjct:  249 RQIVSIQGDPSQRIAAYMVEGLAARMAASGKFI 281          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.170e-62
Identity = 109/195 (55.90%), Postives = 138/195 (70.77%), Query Frame = 3
Query:   93 SFSKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHFSQ 677
            S  KALKCKEP SSD L+ M  L+E CP FKFG+M+ANGAI EA KGE R+HIIDF I+QG+Q+I+L+Q +A+ PG  P +R+TG+DD  S     GGL+++G RL  +A    VPFEFH +    S V  + L    GEAL VNF  +LHH+PDESVST N RD+LLRMVKSL+PK++T+VE + NT    F Q
Sbjct:  232 SIYKALKCKEPKSSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQ 426          

HSP 2 Score: 43.1282 bits (100), Expect = 2.170e-62
Identity = 18/30 (60.00%), Postives = 26/30 (86.67%), Query Frame = 2
Query:    2 RQMVSIQGDPPQRIAAYMVEGLAARMAASG 91
            R++VS+ G+P +R+ AYMVEGL AR+A+SG
Sbjct:  201 RKIVSVSGEPLERLGAYMVEGLVARLASSG 230          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.148e-59
Identity = 105/208 (50.48%), Postives = 137/208 (65.87%), Query Frame = 3
Query:   90 ASFSKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTT----LPHFSQVY*SYITI 701
            +S  KAL+CK+P   + L  M IL+E CP FKFG+ +ANGAI EA K E  VHIIDF I+QG Q+++LI+ + + PG  P++R+TG+DDP S     GGL+++G RL  LAE  GVPFEFH      + V    L  R GEAL VNF   LHHMPDESV+  N RD+LLR+VK L+P +VT+VEQ+ NT     LP F +    Y+ +
Sbjct:  284 SSIYKALRCKDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAV 491          

HSP 2 Score: 45.0542 bits (105), Expect = 2.148e-59
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 2
Query:    2 RQMVSIQGDPPQRIAAYMVEGLAARMAASG 91
            +QMVS+ G+P QR+ AYM+EGL AR+A+SG
Sbjct:  254 QQMVSVSGEPVQRLGAYMLEGLVARLASSG 283          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.645e-58
Identity = 121/214 (56.54%), Postives = 145/214 (67.76%), Query Frame = 3
Query:   30 LLRGLQLTWWKVLQLAWLPLASFSKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            LL GL      V QLA    + +    +C EP S++ L+ M IL+EVCP FKFG+M+ANGAI EA K E RVHIIDF I QGSQ++TLIQ  A+ PG  P +R+TG+DD  S     GGL I+G RL  LA+   VPFEF++V    S V P  L  R GEAL VNFAF LHHMPDESVST N RD+LLRMVKSL+PK+VT+VEQ+ NT    F
Sbjct:  163 LLEGL------VAQLASSGSSIYKALNRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAF 370          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.125e-56
Identity = 102/190 (53.68%), Postives = 131/190 (68.95%), Query Frame = 3
Query:  102 KALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +ALKC+EP S + L+ M+IL+ +CP FKFG+MAANGAI EA + E  +HIIDF I QG+Q+ITLIQ +A+ PG  P +R+TG+DDP S      GL I+G  L+S++E   +P EF  +    + VT  MLE R GEAL VNF  QLHH PDESV   N RD LLRMVK L+PK+ T+VEQ+ +T    F
Sbjct:  262 RALKCREPESKELLSYMRILYNICPYFKFGYMAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEFTPLSVYATQVTKEMLEIRPGEALSVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPF 451          

HSP 2 Score: 36.965 bits (84), Expect = 2.125e-56
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 2
Query:    2 RQMVSIQGDPPQRIAAYMVEGLAARMAASG 91
            R +VSI G+P QR+ AY++EGL AR   SG
Sbjct:  228 RGVVSINGEPIQRLGAYLLEGLVARHGNSG 257          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.300e-54
Identity = 100/190 (52.63%), Postives = 127/190 (66.84%), Query Frame = 3
Query:  102 KALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            K+LKC EP   + ++ M +L+E+CP +KF +  AN  I+EA  GE RVHIIDF I QGSQY+ LIQ +A  PG  P LR+TGVDD +S     GGL ++G RL +LA++ GVPFEFH        V    L    G A+VVNF + LHHMPDESVS  N RD+LL ++KSL+PKLVT+VEQ+ NT    F
Sbjct:   33 KSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPF 222          

HSP 2 Score: 36.965 bits (84), Expect = 4.300e-54
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 2
Query:    8 MVSIQGDPPQRIAAYMVEGLAARMAASG 91
            MVS+ G P QR+  YM EGL AR+  SG
Sbjct:    1 MVSVSGSPIQRLGTYMAEGLRARLEGSG 28          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.067e-48
Identity = 108/209 (51.67%), Postives = 139/209 (66.51%), Query Frame = 3
Query:   90 ASFSKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTT----LPHFSQVY*SYITIL 704
            +S  K+L+ +EP S + L+ + +L EVCP FKFG+M+ANGAI EA K E+R+HIIDF I QGSQ+I LIQ  A+ PG  P++R+TGV D          L  +  RLE LA+   VPF F+AV   +  V    L+ R GEAL VNFA+ LHH+PDESVS  N RD+LLRMVKSL+PK+VT+VEQ+ NT     LP F +   SY T +
Sbjct:  107 SSIYKSLQSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGDGSV-------LVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETL-SYYTAM 307          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.356e-27
Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 3
Query:  135 DRLAAMQILFEVCPCFKFGFMAANGAIIEAFK----GEKRVHIIDFDINQGSQYITLIQTIA------SLPGNRPHLRLTGVDDPESVQRLVGG----LQIIGLRLESLAEALGVPFEFHAVPS-KTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNT-TLPHFSQV 680
            + L + Q+L+E+ PCFK GF AAN AI++A      G    H+IDFDI +G QY+ L++T++      S   N P +++T V +      +  G    L+ +G  L  L + LG+   F+ V S +   +    L C   E L VN AF+L+ +PDESV T N RD+LLR VK L P++VT+VEQ+MN+ T P   +V
Sbjct:  328 EHLISTQLLYELSPCFKLGFEAANLAILDAADNNDGGMMIPHVIDFDIGEGGQYVNLLRTLSTRRNGKSQSQNSPVVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRV 525          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: NSP2_MEDTR (Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27
Identity = 75/181 (41.44%), Postives = 105/181 (58.01%), Query Frame = 3
Query:  132 SDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVP-SKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +D LAA Q+L ++ P  KFG   AN AIIEA   E+RVH+ID+DI +G Q+ +LIQ++AS   N PHLR+T +    + +R +  +Q  G RL S A +LG PF FH           PS L+   GEALV N    L H+   +  +V      L   K+LNPKLVT+VE+++ + +  F
Sbjct:  203 NDTLAAFQLLQDMSPYVKFGHFTANQAIIEAVAHERRVHVIDYDIMEGVQWASLIQSLAS-NNNGPHLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSALKLVRGEALVFNCMLNLPHLSYRAPESV---ASFLNGAKTLNPKLVTLVEEEVGSVIGGF 379          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 3
Query:  162 FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +E CP  KF    AN AI+EAF+G+KRVH+IDF + QG Q+  L+Q +A  PG  P  RLTG+  P +       L  +G +L  LAE + V FE+   V +  + +  SMLE R GE++ VN  F+LH +    ++     +++L  VK + P +VT+VEQ+ N   P F
Sbjct:  288 YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDN--TDHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSL----LARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVF 452          
The following BLAST results are available for this feature:
BLAST of FC930832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SCL1_ARATH1.836e-9473.53Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
CIGR2_ORYSJ2.170e-6255.90Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL5_ARATH2.148e-5950.48Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
PAT1_ARATH5.645e-5856.54Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
CIGR1_ORYSJ2.125e-5653.68Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL13_ARATH4.300e-5452.63Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
SCL21_ARATH1.067e-4851.67Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
SCL8_ARATH1.356e-2739.39Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
NSP2_MEDTR2.313e-2741.44Nodulation-signaling pathway 2 protein OS=Medicago... [more]
GAI1_VITVI1.499e-2639.77DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34109E06EF PostHarvP1 Citrus clementina cDNA clone C34109E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930832 ID=FC930832; Name=FC930832; organism=Citrus clementina; type=EST; length=723bp
CCGGCAGATGGTCTCAATTCAAGGAGATCCTCCTCAGAGGATTGCAGCTT
ACATGGTGGAAGGTCTTGCAGCTCGCATGGCTGCCTCTGGCAAGTTTCTC
TAAAGCTCTAAAATGCAAAGAGCCCCCTTCTTCTGACAGACTAGCAGCAA
TGCAGATCCTCTTTGAGGTGTGTCCTTGTTTTAAATTTGGATTTATGGCA
GCAAATGGTGCAATTATAGAGGCATTTAAAGGTGAAAAGAGAGTACATAT
AATAGATTTTGACATAAATCAAGGTAGTCAATATATAACACTGATACAAA
CAATTGCTTCTCTGCCTGGTAATCGACCTCACTTGAGGTTAACTGGGGTT
GATGATCCAGAGTCAGTTCAACGTCTGGTAGGTGGCCTTCAAATTATTGG
GCTAAGACTTGAGAGTCTAGCAGAAGCGCTTGGAGTGCCATTTGAGTTTC
ATGCAGTGCCCTCAAAGACTTCGCTTGTTACACCATCAATGCTGGAGTGC
AGGCTTGGGGAAGCACTTGTAGTGAACTTTGCTTTCCAGCTTCACCACAT
GCCCGATGAGAGTGTTTCAACAGTAAACCAGAGAGACCAGCTACTCAGGA
TGGTTAAGAGCTTGAATCCAAAGCTTGTAACTGTTGTTGAACAAGATATG
AACACAACACTTCCCCATTTTTCCCAGGTTTATTGAAGCTACATTACTAT
TCTGTGTGTTGAGTCTCTGATGC
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