FC930834

Overview
NameFC930834
Unique NameFC930834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930834_ssr35 microsatellite FC930834_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930834_ssr303 microsatellite FC930834_ssr303:303..314. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig968 contig Ccv1_Contig968:161..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 77/175 (44.00%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  224 DLYEGEKGSLGFMELLGVQDFGXXXXXXXXLFDMVQFQAQNQVPSKGASASSTVNV--------TKIE--CSE--LLNQPATPNXXXXXXXXXEALNDEQVKVEEHVH----DEXXXXXXXXXXXXXXXXXXRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            DL   E+ SLGFMELL  Q            F +   Q Q Q       +SS +          +K+E  CS+  L+N PATPN         EALN+E+ K E++      D+                  RQRE R AFMTKSEVDHLEDGYRWRKYGQKAVK+SPFPRSYYR
Sbjct:   24 DLAAAERHSLGFMELLSSQQHQDFATVSPHSFLLQTSQPQTQTQPSAKLSSSIIQAPPSEQLVTSKVESLCSDHLLINPPATPNSSSISSASSEALNEEKPKTEDNEEEGGEDQQEKSHTKKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYR 198          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 65/213 (30.52%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  125 ERKEVTKTKNHNNMGSS-PFADH--LSTGSQLRGVFDLYE-----------GEKGSLGFMELLGVQDFGXXXXXXXXLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQ-PATPNXXXXXXXXXEALNDEQ------VKVEEHVHDEXXXXXXXXXXXXXXXXXXRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            +++E+++  + +NM +    +DH  L     L  +FD                     F++LL  QD           F    F   N   +   S  + + + + E SE++N  P +PN         EA ND        VK +E    +                  + RE RFAF+TKS++D+L+DGYRWRKYGQKAVK+SP+PRSYYR
Sbjct:   36 QKQEISQASSSSNMANLVTSSDHHPLELAGNLSSIFDTSSLPFPYSYFEDHSSNNPNSFLDLLR-QDHQFASSSNSSSFSFDAFPLPNN--NNNTSFFTDLPLPQAESSEVVNTTPTSPNSTSVSSSSNEAANDNNSGKEVTVKDQEEGDQQQEQKGTKPQLKAKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYR 245          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 2
Query:  572 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            +QREPR +FMTKSEVDHLEDGYRWRKYGQKAVK+SP+PRSYYR
Sbjct:  154 KQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYR 196          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 2
Query:  572 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            R R+PRFAFMTKS+VD+LEDGYRWRKYGQKAVK+SPFPRSYYR
Sbjct:  129 RIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYR 171          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 35/43 (81.40%), Postives = 42/43 (97.67%), Query Frame = 2
Query:  572 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            +++EPR +FMTK+EVDHLEDGYRWRKYGQKAVK+SP+PRSYYR
Sbjct:  165 KKKEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYR 207          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 2
Query:  572 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            ++RE R AFMTKSE+DHLEDGYRWRKYGQKAVK+SP+PRSYYR
Sbjct:  118 KEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYR 160          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = 2
Query:  572 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            ++RE R+AF T+S+VD L+DGYRWRKYGQKAVK++PFPRSYY+
Sbjct:   47 KEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYK 89          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  413 LLNQPATPNXXXXXXXXXEALNDEQVKVEEHVHDEXXXXXXXXXXXXXXXXXXRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            L++ P TPN         EA+N +  + EE   ++                  +++ P+ +F+T+SEV HL+DGY+WRKYGQK VKDSPFPR+YYR
Sbjct:   53 LMHFPTTPNSSSS-----EAVNGDDEE-EEDGEEQQHKTKKRFKFTKMSRKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYR 142          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 2
Query:  578 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            REPRF F TKS+VD L+DGY+WRKYGQK VK+S  PRSYYR
Sbjct:  129 REPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYR 169          
BLAST of FC930834 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 2
Query:  572 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYR 700
            + + PRF+F TKS+ D L+DGYRWRKYGQK+VK+S +PRSYYR
Sbjct:   12 KMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYR 54          
The following BLAST results are available for this feature:
BLAST of FC930834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WRK23_ARATH4.929e-2744.00Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK48_ARATH4.624e-1730.52Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK28_ARATH4.624e-1788.37Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK57_ARATH1.757e-1688.37Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRKY8_ARATH6.677e-1681.40Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK71_ARATH6.677e-1683.72Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK45_ARATH2.375e-1372.09Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRK68_ARATH5.290e-1340.63Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK12_ARATH5.849e-1275.61Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK43_ARATH9.977e-1267.44Probable WRKY transcription factor 43 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34109E08EF PostHarvP1 Citrus clementina cDNA clone C34109E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930834 ID=FC930834; Name=FC930834; organism=Citrus clementina; type=EST; length=700bp
GAGCCTACTTCACACTTCAATAGCCTCACAGTAACTCTCTCTCTCTCTCT
CTCCCTTTCCATTTTGTTCTCTTTTCTTTTGTTTTTTTATGAAGATTAAG
AAGAATTTCAACTGAGGCATAATGGAGAGGAAGGAAGTTACAAAGACGAA
GAATCATAACAATATGGGATCATCACCATTTGCTGATCATCTTTCAACTG
GTTCTCAGCTTCGAGGCGTATTTGACTTGTACGAGGGAGAGAAGGGGTCA
TTAGGGTTTATGGAGTTACTGGGTGTTCAAGACTTTGGTTCTTCTTCTCC
TCCTTCTTCTTCTTTATTTGATATGGTACAGTTCCAGGCACAGAATCAGG
TTCCGTCTAAAGGAGCATCAGCATCTTCAACTGTCAATGTTACAAAGATT
GAATGTTCTGAGTTGTTGAATCAGCCGGCGACGCCTAACTCTTCCTCGAT
TTCATCTGCATCGAGTGAGGCTTTGAATGATGAACAAGTTAAAGTAGAAG
AGCATGTACATGATGAACAAAATCAACAAAAAACCAAGAAACAGTTGAAG
CCCAAGAAGACAAATCAGAAACGACAGAGAGAGCCGAGATTCGCGTTCAT
GACAAAGAGCGAGGTTGATCATCTGGAAGATGGATACCGATGGAGGAAGT
ACGGTCAGAAGGCCGTTAAGGACAGCCCCTTTCCTAGGAGTTACTATCGT
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