FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44
Identity = 89/210 (42.38%), Postives = 128/210 (60.95%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            CKA V W  G+P  +EE++V PP+A EVRVK+LY ++CHTD+    +KG   P+FPR+LGHE  G+VES+G+ V EL  GD V+P F GEC+EC++C SE +N+C  L+       ++ DG SR +I+G+ ++H    ST +EY V+    + K++P   L     LSCG+S+GFGA     K +K                M+GAR+ G
Sbjct:   10 CKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKG-QTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGVMIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAKPKKGQTVAIFGLGAVGLAAMEGARLSG 218          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44
Identity = 89/210 (42.38%), Postives = 128/210 (60.95%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            CKA V W  G+P  +EE++V PP+A EVRVK+LY ++CHTD+    +KG   P+FPR+LGHE  G+VES+G+ V EL  GD V+P F GEC+EC++C SE +N+C  L+       ++ DG SR +I+G+ ++H    ST +EY V+    + K++P   L     LSCG+S+GFGA     K +K                M+GAR+ G
Sbjct:   10 CKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKG-QTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGVMIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAKPKKGQTVAIFGLGAVGLAAMEGARLSG 218          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.563e-44
Identity = 98/225 (43.56%), Postives = 134/225 (59.56%), Query Frame = 3
Query:   33 NESPAIKMSISPAMTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSK-GFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP--DGSSRMS-IRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            N S   K S  P + CKA V    GEP  +EEI V PP+  EVR++++  ++CH+D+   K   P   FPR+LGHE +G+VES+G+ VKE+ EGD V+PTF+ +C +C +C S  +NLC K+PF     MP  D SSR + + G+ L+H    S+ +EY V+D   VVK+D SI  S A  LSCG S+G GAAW+  KVEK                 +GAR+ G
Sbjct:    5 NSSSDNKSSHKP-IRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCG 228          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 98/221 (44.34%), Postives = 129/221 (58.37%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLP--LFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF--TFHGLMPDGSSRMSI---------RGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            +TCKA V WG   P  ++EI V+PP+  EVRVK+LY+SICHTD+    G       FPR+LGHE VG+VES+G+ VK++KEGD VIPTF GEC EC+ C  E +NLC +Y        ++ DG +R S          + Q +YH    ST TEY V+D+  VVK+DP+  L   S LSCG S+G GAAW    V++                 +GAR +G
Sbjct:    9 ITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDPMKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARG 229          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-43
Identity = 89/183 (48.63%), Postives = 116/183 (63.39%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W  G+P  +EEI+V PPKA EVR+K+L  ++CHTD  +  G  P   FP +LGHEG G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR + +G+ ++H    ST +EY VV    V K+DPS  L     L CG S+G+GAA    KVE
Sbjct:    8 CKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVE 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 91/210 (43.33%), Postives = 126/210 (60.00%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            C+A V W  G+P  +EE++V PP+A EVR+K+L+ S+CHTD+    +KG   PLFPR+ GHE  G+VES+G+ V +LK GD V+P F GEC++C +C SE +N+C L    T  G+M  DG SR SI+G+ +YH    ST +EY VV    + K++PS  L     LSCG S+G GA     K +K                 +GAR+ G
Sbjct:   11 CRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKG-QNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRINTDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSG 219          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 88/186 (47.31%), Postives = 115/186 (61.83%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEK 623
            + CKA V W    P  +E IQV PPKA EVRVK+LY ++CHTD  +  G  P  LFP VLGHEG G+VES+G+ V     GD V+P ++ +C+ECE C +   NLC K   +  +G MPDGSSR +  G++L+H   CST +EY VV    + KV+P   L   S L CG S+G+GA     KVE+
Sbjct:    9 INCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPKTNLCQKIRISQGNGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTGYGAVLNTCKVEE 194          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 81/180 (45.00%), Postives = 115/180 (63.89%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKV 617
            CKA V WG  +P+ +E+I+V PPKA EVRVK+L   IC TD    KG  +  FP ++GHE VG+VES+G+EV  ++ GD VIP F+ +CREC  C +   NLC++   T  G++ DG++R + +G+ + H    ST TEY V+D + V K+D       A  + CG+S+G+GAA K  KV
Sbjct:   10 CKAAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKGTMVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLCIRSDLTGRGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAKV 189          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 89/210 (42.38%), Postives = 123/210 (58.57%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            CKA V W  G+P  +EE++V PP+  EVR+K+L+ S+CHTD+    +KG   PLFPR+ GHE  G+VES+G+ V +L+ GD V+P F GEC EC +C SE +N+C  L+      G++ DG SR SI G+ +YH    ST +EY VV +  V K++P   L     +SCG S+G GA     K +K                 +GARI G
Sbjct:   10 CKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKG-QTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTERGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAG 218          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.911e-42
Identity = 88/210 (41.90%), Postives = 124/210 (59.05%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            CKA V W  G+P  +EE++V PP+A EVRVK+LY ++CHTD+    +KG   P+FPR+LGHE  G+VES+G+ V EL  GD V+P F GEC++C +C SE +NLC  L+       ++ DG SR +I G+ ++H    ST +EY V+    + K++P   L     LSCG S+G GA     K +K                M+GAR+ G
Sbjct:   10 CKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKG-QTPVFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKDCAHCKSEESNLCDLLRINVDRGVMIGDGQSRFTINGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCVLSCGLSTGLGATLNVAKPKKGSTVAIFGLGAVGLAAMEGARMAG 218          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADH2_ORYSJ1.197e-4442.38Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI1.197e-4442.38Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
ADHL7_ARATH1.563e-4443.56Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
ADHL3_ARATH4.548e-4444.34Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADHX_MOUSE2.257e-4348.63Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
ADH_MALDO5.029e-4343.33Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADHX_CAEEL5.029e-4347.31Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH7_RAT1.120e-4245.00Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH1_ARATH1.120e-4242.38Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH3_HORVU1.911e-4241.90Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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