FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.844e-50
Identity = 102/160 (63.75%), Postives = 126/160 (78.75%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            +++ LNP AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL EMQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE AK   LQFLE+ K    +  E D+E L  VART+LRT
Sbjct:    3 AVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK----VSKEMDRETLIDVARTSLRT 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.844e-50
Identity = 102/160 (63.75%), Postives = 126/160 (78.75%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            +++ LNP AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL EMQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE AK   LQFLE+ K    +  E D+E L  VART+LRT
Sbjct:    3 AVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK----VSKEMDRETLIDVARTSLRT 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.409e-50
Identity = 102/160 (63.75%), Postives = 126/160 (78.75%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            +++ LNP AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL EMQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE AK   LQFLE+ K    +  E D+E L  VART+LRT
Sbjct:    3 AVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVK----VSREMDRETLIDVARTSLRT 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.409e-50
Identity = 102/160 (63.75%), Postives = 126/160 (78.75%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            +++ LNP AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL EMQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE AK   LQFLE+ K    +  E D+E L  VART+LRT
Sbjct:    3 AVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVK----VSREMDRETLIDVARTSLRT 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 5.367e-50
Identity = 101/161 (62.73%), Postives = 128/161 (79.50%), Query Frame = 1
Query:  166 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            M+++ LNP AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL+EMQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFEIAK   L+ LE+ K    +  E D+E L  VA+T+LRT
Sbjct:    1 MAVKALNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLQEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVAEGFEIAKEKALEVLEQVK----VTKEMDRETLIDVAKTSLRT 157          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 101/160 (63.12%), Postives = 125/160 (78.12%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            +++ LNP AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL EMQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE AK   LQ LE+ K    +  E D+E L  VART+LRT
Sbjct:    3 AVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQVLEQIK----VSREMDRETLIDVARTSLRT 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.023e-48
Identity = 94/161 (58.39%), Postives = 127/161 (78.88%), Query Frame = 1
Query:  166 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            MSL++LNP AE L + AAL +N+ +A+GLQ VL+TNLGPKGT+KMLV GAG+IKLTKDG  LL EMQIQ+PTA++IAR A AQD+I+GDGTT+ V  +GEL++Q+ R I EG+HPR++ DGFEIA++ +++FL++FK         D+E L  VAR++L T
Sbjct:    1 MSLQLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKT-NLSNDREFLLQVARSSLLT 160          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.568e-48
Identity = 94/160 (58.75%), Postives = 124/160 (77.50%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            S++ LNP AE+   +AAL +NI+ A+GLQDV+++NLGPKGT+KMLV GAGDIKLTKDGN LL EM IQ+PTA MIA+ + AQDD++GDGTTSTV+ IGEL+KQ+E  + EG+HPR++ +GFE A   TL+ LEKFK    +    ++++L  V RT LRT
Sbjct:    3 SIQCLNPKAELARHAAALELNISGARGLQDVMRSNLGPKGTLKMLVSGAGDIKLTKDGNVLLHEMAIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLEGLHPRIVTEGFEWANTKTLELLEKFKKEAPV----ERDLLVEVCRTALRT 158          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.245e-47
Identity = 94/147 (63.95%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  208 KSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            +  AL +NI+A KGLQ+VLKTNLGP+GT+KMLVGG GDIKLTKDG  LL EMQIQ+PTA +IARTA AQDDI+GDGTT+ VI IGEL+KQSER + E +HPR++ +GFE+AK   L FLE+FK      D  D+E+L  +A+T+LRT
Sbjct:   16 RGQALLLNISAGKGLQNVLKTNLGPRGTLKMLVGGGGDIKLTKDGKVLLHEMQIQHPTAALIARTATAQDDITGDGTTTNVITIGELLKQSERYLQENIHPRIIAEGFELAKDRCLAFLEEFKQ--TSQDTLDRELLISIAKTSLRT 160          

HSP 2 Score: 23.0978 bits (48), Expect = 7.245e-47
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  627 SKNNSKNKLYESLADQLTDIVVN 695
            +K + + KL   LADQLT+ VV+
Sbjct:  154 AKTSLRTKLPADLADQLTEQVVD 176          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 96/160 (60.00%), Postives = 123/160 (76.88%), Query Frame = 1
Query:  169 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            +++ +N  AEV    AAL +NI AA+GLQDVL+TNLGPKGT+KMLV GAGD+KLTKDGN LL EMQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFEIAK   L+ LE+ K    +  E  +EI   VART+L+T
Sbjct:    3 AIKAINSKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEIAKIKALEVLEQVK----IKKEMKREIHLDVARTSLQT 158          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPZ_MOUSE1.844e-5063.75T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPZ_BOVIN1.844e-5063.75T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPZ_PONAB2.409e-5063.75T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPZ_HUMAN2.409e-5063.75T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPZ_CHICK5.367e-5062.73T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPZ_RABIT1.196e-4963.13T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]
TCPZ_YEAST5.023e-4858.39T-complex protein 1 subunit zeta OS=Saccharomyces ... [more]
TCPZ_CAEEL8.568e-4858.75T-complex protein 1 subunit zeta OS=Caenorhabditis... [more]
TCPZ_DICDI7.245e-4763.95T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPW_BOVIN2.756e-4660.00T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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