FC930871

Overview
NameFC930871
Unique NameFC930871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15227 contig Ccv1_Contig15227:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.305e-65
Identity = 130/194 (67.01%), Postives = 153/194 (78.87%), Query Frame = 3
Query:  126 MACRLADSMFLFMGPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689
            MA R+ADS+F F GP Q      K+   S   SPG+  +K   LL+KG  H+  RC  P  R    I+AVA PVAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+VFEIDD+KA KSVL+SV+SY LGL MI+K+PWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVG LAFL
Sbjct:    1 MASRIADSLFAFTGPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFL 194          
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.906e-65
Identity = 124/189 (65.61%), Postives = 150/189 (79.37%), Query Frame = 3
Query:  126 MACRLADSMFLFMGPHQ-RPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689
            MA R+ADS+F F GP Q  P   +      SPG+  ++   LL+KG +        +    I+AV VPVAPPS D+A+ R+Q+AESYGF+QIG+ LP+NVT+KD++D+LPK+VFEIDDVKAWKSVL+SV+SYALGL MI+KAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKL+EDIVG LAFL
Sbjct:    1 MASRIADSLFAFTGPQQCLPRAPKLASARLSPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFL 189          
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.104e-64
Identity = 119/188 (63.30%), Postives = 144/188 (76.60%), Query Frame = 3
Query:  126 MACRLADSMFLFMGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689
            MAC LADS+ LF G +Q+P   + I    SPG+  L    L+ K  + +R  +       I AVA+PV P   +SA+ RKQ+AE YGFRQ+GEPL ++VT+KDVI+ LPK+VFEIDDVKAWKSVL+SV+SYALGL MISKAPWYLLPLAW WTGTA+TGFFVIGHDCAH+SFS NKL+EDIVG LAF+
Sbjct:    1 MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFM 188          
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.489e-57
Identity = 107/168 (63.69%), Postives = 135/168 (80.36%), Query Frame = 3
Query:  210 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVAPPSE----DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689
            +S G+  +KW+   ++ + H R +   +GTR     +QAVAVPVA PS     D+ +  KQ+AE YGF+QIGEPLP++VTM+D+I SLPK+VFEI+D KAW +VL+SV+SYALG+ MI+KAPWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVG LAF+
Sbjct:   27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLKQLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFM 194          
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 45/90 (50.00%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  417 NVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAF 686
            ++ ++D+I +LPK+ FE    KAW SVL+++ + A+G L I   PWY LP+ W WTGTA+TG FV+GHDC H+SF+K + + D+VG++AF
Sbjct:   23 DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAF 112          
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22
Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  429 KDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689
            +D+I++LP  VF  D  KAW +V+++V    LG L I+ APW+LLP+ W +TGTA+TGFFVIGHDC H+SFS+N  + D VG++ FL
Sbjct:   26 EDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFL 112          
The following BLAST results are available for this feature:
BLAST of FC930871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FAD6C_ARATH1.305e-6567.01Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_BRANA2.906e-6565.61Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_SOYBN1.104e-6463.30Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_SPIOL6.489e-5763.69Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
DESA_SYNY34.694e-2350.00Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL3.974e-2254.02Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
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Properties
Property NameValue
Genbank descriptionC34109H10EF PostHarvP1 Citrus clementina cDNA clone C34109H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930871 ID=FC930871; Name=FC930871; organism=Citrus clementina; type=EST; length=737bp
GACTGTCCCGCTTTAGAAATTCTATCCATCCACTTTTTTCACATTCACTC
AATCCCAATATATATCCAAGTGGGAGGGGGGCTCTTGTGAATTGGAATTT
CTGCATTTCTCTTGCTCAAAACATAATGGCTTGCAGACTTGCAGATTCTA
TGTTCCTTTTCATGGGCCCCCATCAAAGGCCAACTGGGAGTCAGAAAATT
GGATGCTTTAGTTCACCTGGCCTTTGTCAGCTGAAGTGGGAGAGTCTTCT
TGTGAAGGGAGTTAAGCACAAAAGATGTTCAATTCCCTCTCGAGGGACTA
GATTTATACAGGCTGTGGCCGTTCCAGTTGCACCACCTTCAGAAGACAGT
GCGGATTGTAGAAAGCAGATAGCAGAAAGTTATGGGTTTAGGCAAATCGG
AGAGCCACTGCCTGAAAATGTGACAATGAAGGATGTCATTGATTCTCTCC
CAAAAAAGGTATTTGAGATTGATGATGTGAAAGCATGGAAGTCTGTTTTA
TTATCCGTCAGTTCATATGCGTTGGGGCTTCTCATGATCTCAAAGGCCCC
ATGGTATTTGCTTCCTTTGGCTTGGGCATGGACAGGGACTGCGGTCACAG
GGTTCTTTGTTATAGGCCATGATTGTGCCCACAAATCATTTTCAAAGAAC
AAGTTACTGGAAGACATCGTGGGAAACCTGGCCTTTCTGCACTGATATAC
CATATGAACCCTGGCGTTTAGACGACAGCATCATGCA
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