FC930871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 1.305e-65 Identity = 130/194 (67.01%), Postives = 153/194 (78.87%), Query Frame = 3 Query: 126 MACRLADSMFLFMGPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689 MA R+ADS+F F GP Q K+ S SPG+ +K LL+KG H+ RC P R I+AVA PVAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+VFEIDD+KA KSVL+SV+SY LGL MI+K+PWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVG LAFL Sbjct: 1 MASRIADSLFAFTGPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFL 194
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 2.906e-65 Identity = 124/189 (65.61%), Postives = 150/189 (79.37%), Query Frame = 3 Query: 126 MACRLADSMFLFMGPHQ-RPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689 MA R+ADS+F F GP Q P + SPG+ ++ LL+KG + + I+AV VPVAPPS D+A+ R+Q+AESYGF+QIG+ LP+NVT+KD++D+LPK+VFEIDDVKAWKSVL+SV+SYALGL MI+KAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKL+EDIVG LAFL Sbjct: 1 MASRIADSLFAFTGPQQCLPRAPKLASARLSPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFL 189
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 1.104e-64 Identity = 119/188 (63.30%), Postives = 144/188 (76.60%), Query Frame = 3 Query: 126 MACRLADSMFLFMGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689 MAC LADS+ LF G +Q+P + I SPG+ L L+ K + +R + I AVA+PV P +SA+ RKQ+AE YGFRQ+GEPL ++VT+KDVI+ LPK+VFEIDDVKAWKSVL+SV+SYALGL MISKAPWYLLPLAW WTGTA+TGFFVIGHDCAH+SFS NKL+EDIVG LAF+ Sbjct: 1 MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFM 188
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 6.489e-57 Identity = 107/168 (63.69%), Postives = 135/168 (80.36%), Query Frame = 3 Query: 210 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVAPPSE----DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689 +S G+ +KW+ ++ + H R + +GTR +QAVAVPVA PS D+ + KQ+AE YGF+QIGEPLP++VTM+D+I SLPK+VFEI+D KAW +VL+SV+SYALG+ MI+KAPWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVG LAF+ Sbjct: 27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLKQLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFM 194
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23 Identity = 45/90 (50.00%), Postives = 67/90 (74.44%), Query Frame = 3 Query: 417 NVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAF 686 ++ ++D+I +LPK+ FE KAW SVL+++ + A+G L I PWY LP+ W WTGTA+TG FV+GHDC H+SF+K + + D+VG++AF Sbjct: 23 DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAF 112
BLAST of FC930871 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22 Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 3 Query: 429 KDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGNLAFL 689 +D+I++LP VF D KAW +V+++V LG L I+ APW+LLP+ W +TGTA+TGFFVIGHDC H+SFS+N + D VG++ FL Sbjct: 26 EDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFL 112 The following BLAST results are available for this feature:
BLAST of FC930871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930871 ID=FC930871; Name=FC930871; organism=Citrus clementina; type=EST; length=737bpback to top |