FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15235 contig Ccv1_Contig15235:1..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.685e-61
Identity = 120/150 (80.00%), Postives = 132/150 (88.00%), Query Frame = 1
Query:   91 MRSSVLRSVKTLAKPAGAR------GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            MR+S+LR +++ +  A  R       Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+VNMI
Sbjct:    1 MRASMLRLIRSRSSSAAPRPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLVSQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAVVNMI 150          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 4.149e-60
Identity = 114/150 (76.00%), Postives = 133/150 (88.67%), Query Frame = 1
Query:   91 MRSSVLRSVKTLAKPAGA------RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            M++S+LRSV++    + +      R +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSEV GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA++NMI
Sbjct:    1 MKASILRSVRSAVSRSSSSNRLLSRSFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMI 150          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.624e-58
Identity = 110/143 (76.92%), Postives = 127/143 (88.81%), Query Frame = 1
Query:   94 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LYDIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L  AIAKYCP A+VNMI
Sbjct:    3 RSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMI 145          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 8.652e-58
Identity = 110/143 (76.92%), Postives = 127/143 (88.81%), Query Frame = 1
Query:   94 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYDIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+LC+AIAKYCP+A++NMI
Sbjct:    3 RSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMI 145          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.517e-57
Identity = 113/141 (80.14%), Postives = 125/141 (88.65%), Query Frame = 1
Query:  100 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            S++RSV  +A+    RGYSSESVP RKVAVLGAAGGIGQPLALLMKLNPLVS+L+LYDIA TPGVAADV HINTRSEV GY G +QLG+ALE  DVVIIPAGVPRKPGMTRDDLFNINAGIV+ L +AIAKYCP+AI+NMI
Sbjct:    6 SLIRSVSRVAR----RGYSSESVPQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMI 142          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 9.565e-57
Identity = 110/143 (76.92%), Postives = 127/143 (88.81%), Query Frame = 1
Query:   94 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            RS+++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYDIANTPGVAADVGHINTRS+V GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L SAIAKYCP+A+VNMI
Sbjct:    3 RSALVRSSASAKQSLLRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLWSAIAKYCPHALVNMI 145          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 5.444e-44
Identity = 96/155 (61.94%), Postives = 111/155 (71.61%), Query Frame = 1
Query:   61 ASLKSKPATKMRSS-VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            AS    PA++M  S +LR     AK A          P  KVA+LGA+GGIGQPLALLMK+NPLVS L LYD+ NTPGV AD+ H+NT + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK CPNAIVN+I
Sbjct:   15 ASHLRPPASQMEESPLLRGSNCRAKGAA---------PGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVI 160          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.287e-42
Identity = 90/142 (63.38%), Postives = 105/142 (73.94%), Query Frame = 1
Query:   97 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            SSVLR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G  QL +AL   D+V+IPAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIVN+I
Sbjct:   28 SSVLRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLI 160          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 3.902e-42
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV +D+ H++T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC AIAK CP AIVN+I
Sbjct:   43 KVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVI 157          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 6.655e-42
Identity = 87/139 (62.59%), Postives = 109/139 (78.42%), Query Frame = 1
Query:  115 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A+V +I
Sbjct:    2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMVCII 140          
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDHM_EUCGU1.685e-6180.00Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHM_CITLA4.149e-6076.00Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHM2_ARATH6.624e-5876.92Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM1_ARATH8.652e-5876.92Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_FRAAN2.517e-5780.14Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_BRANA9.565e-5776.92Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHG_ORYSJ5.444e-4461.94Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG_CUCSA2.287e-4263.38Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_SOYBN3.902e-4272.17Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHM_MOUSE6.655e-4262.59Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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