FC930941

Overview
NameFC930941
Unique NameFC930941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15238 contig Ccv1_Contig15238:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.697e-53
Identity = 93/148 (62.84%), Postives = 107/148 (72.30%), Query Frame = 2
Query:  245 ESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKK 688
            E PY +FNWNVTYG I PLGV QQGILINGQFPGP I   +N+N++++VFN LDEPFL +WNGVQ R+NSWQDG  GT CPI P +NFTY  QVKDQIGSY YFP+ A H            SR LIPVPFD PA ++ +  GDWY K
Sbjct:   22 EDPYLYFNWNVTYGTIAPLGVPQQGILINGQFPGPRINCTSNNNIVVNVFNNLDEPFLFTWNGVQHRKNSWQDGTPGTMCPIMPGQNFTYRFQVKDQIGSYSYFPTTALHRAAGGYGALNVHSRALIPVPFDNPADEYNVFVGDWYNK 169          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.893e-48
Identity = 94/176 (53.41%), Postives = 115/176 (65.34%), Query Frame = 2
Query:  206 LLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY-KKITLI*KHFDSGSDL 730
            LL+ F+ +S      PY F+N+ V+Y    PLGV QQ I ING+FPGP+I   TN+NL+++V N LDE  L+ WNG+QQRR SWQDGV GTNCPIPP+ N+TY  QVKDQIGS+FYFPSL F              R +IPVPF  P GD T+  GDWY +  T + K  D G DL
Sbjct:    8 LLVFFVNISFCFAADPYSFYNFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNENLVVNVRNKLDEGLLLHWNGIQQRRVSWQDGVLGTNCPIPPKWNWTYEFQVKDQIGSFFYFPSLHFQRASGGFGSFVVNPRAIIPVPFSTPDGDITVTIGDWYIRNHTALRKALDDGKDL 183          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 93/174 (53.45%), Postives = 110/174 (63.22%), Query Frame = 2
Query:  203 CLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY-KKITLI*KHFDSG 721
            CL L          E PY    WNVTYG   PLGV QQ ILINGQFPGP+I + +N+N+II+VFN LDEPFL++WNG+Q R+N WQDG  GT CPI P  N+TY  Q KDQIGSYFY+P+   H            SR LIPVP+  P  D+T+L GDWY K  T + K  D G
Sbjct:   10 CLYLAAAATVVVHAEDPYFHHVWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNVIINVFNNLDEPFLLTWNGIQHRKNCWQDGTPGTMCPIMPGTNYTYHFQPKDQIGSYFYYPTTGMHRAAGGYGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTQLKKFLDGG 183          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.658e-44
Identity = 89/185 (48.11%), Postives = 116/185 (62.70%), Query Frame = 2
Query:  182 ASYSSICCLLLVFMLVSCTR-GESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY-KKITLI*KHFDSGSDL 730
            A+ S +   LL F L+S       P+  +++ V+Y    PLGV QQ I +NGQFPGP + A TN N++++VFN LDEP L++W G+Q RRNSWQDGV GTNCPIPP  NFTY  QVKDQIGS+FY PSL F             +R +IP+PF  P G+   + GDWY +    + +  DSG +L
Sbjct:    3 ATCSLLASFLLCFALLSAVSFAADPFVSYDFRVSYLTASPLGVPQQVIAVNGQFPGPLLNATTNYNVVVNVFNHLDEPLLLTWPGIQMRRNSWQDGVLGTNCPIPPRWNFTYQFQVKDQIGSFFYSPSLNFQRASGGFGPIVINNRDIIPIPFPQPDGELIFIIGDWYTQDHKALRRALDSGKEL 187          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.027e-42
Identity = 83/161 (51.55%), Postives = 105/161 (65.22%), Query Frame = 2
Query:  251 PYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY-KKITLI*KHFDSGSDL 730
            PY  +++ ++Y    PLGV QQ I +NG+FPGP I A TN N+ ++V N LDEP L++W GVQ RRNSWQDGV GTNCPIPP  NFTY  Q+KDQIGSYFY PSL F             +R L+P+PF  P G+   + GDWY +  T + +  DSG +L
Sbjct:   26 PYVSYDFTLSYITASPLGVPQQVIAVNGKFPGPVINATTNYNVHVNVLNHLDEPLLLTWPGVQMRRNSWQDGVLGTNCPIPPNWNFTYDFQLKDQIGSYFYSPSLNFQRASGGFGALIINNRDLVPIPFTEPDGEIIFIIGDWYTQNHTALRRILDSGKEL 186          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC4_ARATH (Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 52/173 (30.06%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  179 MASYSSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKKIT 694
            M S+      L+ F  V     ES  R + +NV   ++  L   +  + +NG++PGP+I A  +D L+I V N +     I W+GV+Q R  W DG  Y T CPI P + +TY   +  Q G+ ++   + +              R  +P PF  P  +  I+ G+W+K  T
Sbjct:    1 MGSHMVWFLFLVSFFSVFPAPSESMVRHYKFNVVMKNVTRLCSSKPTVTVNGRYPGPTIYAREDDTLLIKVVNHVKYNVSIHWHGVRQVRTGWADGPAYITQCPIQPGQVYTYNYTLTGQRGTLWWHAHILWLRATVYGALVILPKRG-VPYPFPKPDNEKVIVLGEWWKSDT 172          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC2_THACU (Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  263 FNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFL-----ISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLA 568
            + ++V  G + P GV +  +L+NG+FPGP I A   D L I+V N L +P +     I W+G+ Q R + +DG  + T CPIPP++++TY + + +Q G+Y+Y   L+
Sbjct:   24 YGFDVANGAVAPDGVTRNAVLVNGRFPGPLITANKGDTLKITVRNKLSDPTMRRSTTIHWHGLLQHRTAEEDGPAFVTQCPIPPQESYTYTMPLGEQTGTYWYHSHLS 131          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC14_ORYSJ (Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC14 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 54/171 (31.58%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  206 LLLVFMLVSCTRGES-------PYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPP----EKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY 682
            +LL+  L+ C R ++        + F   N+T   +  LG +Q    +NGQFPGP +EA   D L++ V N       I W+GV QR ++W DG    T CPI P      ++TY   V  Q G+ ++   ++F              RP +P PF  P  + T+L G+W+
Sbjct:   12 ILLIVSLLLCLRQQAVVDAAIVEHTFHVGNLT---VERLGQRQVITAVNGQFPGPKVEARNGDTLLVRVVNNSPYNITIHWHGVLQRLSAWADGPAMVTQCPILPGSGAGSSYTYRFNVTGQEGTLWWHAHVSF-LRATVYGALLIRPRPGVPYPFPAPHAEHTLLLGEWW 178          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 51/179 (28.49%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  206 LLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGD-WYKKITLI*KH-FDSGSDLP 733
            LL    +++  R  +  RF+ + V    +  L    + + +N +FPGP+I A  +D ++I V N       I W+G++Q+R+ W DG  Y T CPI   ++FTY  +V  Q G++ +    ++              +  +P PF  P  + TIL G+ W K +  + +H  +SG   P
Sbjct:   15 LLFTLQVMNIGRIGAATRFYQFKVQTIRLTRLCQTNEIVTVNKKFPGPAISAQEDDRIVIKVINMTPYNTTIHWHGIKQKRSCWYDGPSYITQCPIQSGQSFTYNFKVAQQKGTFLWHAHFSW-LRATVYGPLIVYPKASVPYPFKKPFNEHTILLGEYWLKNVVELEQHVLESGGPPP 192          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSI (Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 2
Query:  191 SSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGV-YGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLI-PVPFDPPAGDFTILAGDWYK 685
            S +C + +  + V+   GE+      + V   +   L    +  ++NGQFPGP+++ +  D +++ V N L     I W+GV+Q R+ W DG  + T CPIPP    TY   V  Q+G+ ++    A               RP     PF  PA D  I+ G+W++
Sbjct:    9 SLLCAITVAVLAVAVVSGEAAVVEHTFVVHEMNATHLCNTTKIYVVNGQFPGPTVDVMEGDTVVVHVINKLPFGLTIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNVTGQVGTLWWH---AHVTCLRATINGAFIVRPRDGKYPFPTPAKDVPIIIGEWWE 172          
The following BLAST results are available for this feature:
BLAST of FC930941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ASOL_TOBAC9.697e-5362.84L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]
SKU5_ARATH1.893e-4853.41Monocopper oxidase-like protein SKU5 OS=Arabidopsi... [more]
ASOL_BRANA3.228e-4853.45L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]
SKS1_ARATH1.658e-4448.11Monocopper oxidase-like protein SKS1 OS=Arabidopsi... [more]
SKS2_ARATH2.027e-4251.55Monocopper oxidase-like protein SKS2 OS=Arabidopsi... [more]
LAC4_ARATH4.255e-1630.06Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV... [more]
LAC2_THACU5.558e-1637.96Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 ... [more]
LAC14_ORYSJ1.617e-1531.58Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC6_ARATH2.112e-1528.49Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
LAC19_ORYSI6.145e-1529.34Putative laccase-19 OS=Oryza sativa subsp. indica ... [more]

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Properties
Property NameValue
Genbank descriptionC34110F10EF PostHarvP1 Citrus clementina cDNA clone C34110F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930941 ID=FC930941; Name=FC930941; organism=Citrus clementina; type=EST; length=738bp
GACCAAGCAAAAAAGAAAAAGAGAGAGAAAAAGAAAAAAAAAACTAAAGT
TGAGATAGTGAGGTAGTGATTGATATGGCTTTACAGGGATAAAGAAGTTG
GAAACTCTCTTTCTTTTAGTTATTTTTGTTACCATCTATTCTTGTTTAAG
TTTTTGCTCAAGGTTGAGTGTGAGGGAGATGGCTAGTTATAGCAGTATAT
GTTGTTTGCTTTTAGTGTTTATGCTTGTGAGTTGCACTAGAGGTGAAAGT
CCTTACAGATTTTTTAACTGGAATGTTACATACGGTGATATTTATCCTCT
TGGTGTTAAACAACAGGGGATATTGATTAATGGGCAATTTCCAGGGCCTT
CCATTGAGGCTGTGACCAATGATAACTTGATTATCAGTGTTTTCAATGCC
TTGGATGAACCATTTCTCATCTCTTGGAATGGTGTCCAGCAGAGAAGGAA
CTCTTGGCAAGATGGAGTTTATGGCACAAACTGCCCAATCCCTCCAGAAA
AAAACTTCACATATGTTCTACAAGTCAAGGATCAAATTGGTAGCTACTTC
TATTTCCCCTCTCTTGCTTTTCACAAAGCTGCAGGTGGCTATGGTGGCAT
AAAAATTGCAAGCCGACCACTTATTCCTGTGCCCTTTGATCCTCCTGCTG
GAGATTTCACCATTCTTGCTGGAGACTGGTACAAGAAAATCACACTGATT
TGAAAGCATTTTGACAGTGGGAGTGATCTTCCTTTCCT
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