FC930958

Overview
NameFC930958
Unique NameFC930958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
PostHarvP1cdna_library
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13760 contig Ccv1_Contig13760:108..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930958 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.458e-55
Identity = 107/166 (64.46%), Postives = 130/166 (78.31%), Query Frame = 3
Query:  204 NNPSLITQCLHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFP 698
            N+P L T+     ++T   F        C S +N  D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAG+C+LI++ PEKKGDR+EA+YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P
Sbjct:   45 NSPGLSTRARSTTSSTGGFFRT-----ICSSSSN--DYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYP 203          
BLAST of FC930958 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.126e-54
Identity = 101/154 (65.58%), Postives = 127/154 (82.47%), Query Frame = 3
Query:  240 QAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFP 698
            ++ TS N  V +  F   +    +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KRVGITAG+C+LI++ PEK GDR+EA+YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P
Sbjct:   56 RSTTSKNLNVTRAFFW--NWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYP 207          
BLAST of FC930958 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.001e-54
Identity = 101/149 (67.79%), Postives = 124/149 (83.22%), Query Frame = 3
Query:  258 NFTVPKRSFTCR--SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFP 698
            +FT  K     R  SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEKKG+R+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P
Sbjct:   54 SFTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYP 202          
BLAST of FC930958 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.361e-52
Identity = 98/155 (63.23%), Postives = 127/155 (81.94%), Query Frame = 3
Query:  243 AATSCNFTVPKRSFTCRSQANS---SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFP 698
            +++  +FT  K+    R+ + +   +++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEK GDR+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P
Sbjct:   49 SSSPTSFTPKKKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYP 203          
The following BLAST results are available for this feature:
BLAST of FC930958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC4_ARATH1.458e-5564.46Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC3_ARATH6.126e-5465.58Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC2_ARATH8.001e-5467.79Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH3.361e-5263.23Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34110H03EF PostHarvP1 Citrus clementina cDNA clone C34110H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930958 ID=FC930958; Name=FC930958; organism=Citrus clementina; type=EST; length=700bp
GACATTTTCCCATCAGAAAATTCCCTCACTTTCTCTCCTCCCAAACAGTC
AAACACTCATTTAACAACAGAAATTATCAACAAAAGATTATCCCCAATGG
CTTGTTCAAGCGCTGCTTTGAGAACCATCTCTTCTGCTTCTGTCAAGCTA
GCCAATTCAACATCACTAACCAAATCATCATCAATTTTAGTACCATTAAG
CTGAATAATCCTTCTCTAATCACTCAATGCCTCCACCTTCAAGCCGCCAC
AAGCTGCAACTTCACAGTACCCAAAAGATCTTTCACTTGCAGAAGCCAAG
CTAACTCATCAGATGATCCCAGACCCACCAAGGTTCAAGAACTTCATGTG
TATGAGATCAACGAGCGAGATCGTGGCAGTCCAGCTTATCTTCGCTTGAG
CCAGAAACCTGTGAATTCACTTGGTGATCTTGTCCCTTTTAGCAACAAAT
TATATACCGGAGACCTGCAAAAGAGGGTGGGAATAACAGCGGGTATATGC
ATTTTGATCGAAAACAAACCAGAAAAGAAAGGTGACCGATATGAAGCAAC
TTACAGCTTCTACTTTGGAGACTATGGTCACATAGCTGTGCAAGGACCGT
ATTTGACCTATGAGGACACTTATCTGGCTGTGACTGGTGGATCCGGCATC
TTCGAGGGAGTGTATGGGCAGGTTAAGCTGCAGCAACTTGTGTTTCCTTT
back to top