FC930966

Overview
NameFC930966
Unique NameFC930966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930966_ssr80 microsatellite FC930966_ssr80:80..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15242 contig Ccv1_Contig15242:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: C3H41_ORYSJ (E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica GN=MKRN PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.049e-40
Identity = 85/185 (45.95%), Postives = 100/185 (54.05%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVK---------PXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSALSRPFL------PPNKTAWNPESVCNDSLE---NDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHPFR 709
            +KRVLCKFF HGACLKGE+CEFSHDW D PNN+CT+YQKG CSYGSRCRY+HVK         P                       +            +S   L      P  +  +  ESV  D ++   +  V     L PAD  ICSFAA GNCP GE+CP +HGD C TCGK CLHP+R
Sbjct:    3 TKRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSCSYGSRCRYDHVKVSRNPTVAPPPSSSTTTRASSSLQPLSFGRPHHVGYQADSSNPRQQISMDVLAHSGSKPVWRNDFQHESVLEDGIDWSISPTVQNQTTLSPADLPICSFAAGGNCPYGEECPQMHGDLCTTCGKMCLHPYR 187          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: C3H35_ARATH (E3 ubiquitin-protein ligase makorin OS=Arabidopsis thaliana GN=MKRN PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.583e-39
Identity = 79/171 (46.20%), Postives = 101/171 (59.06%), Query Frame = 2
Query:  206 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRN---LKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHPFR 709
            MS R+LCKFF HG+CLKGE+CEFSHD KDPPNN+CT+YQK  C YGSRCRY+HV+                         + +P +  +  +L R        +  P        +N++ D+  N   + P +  ICSFAAAG+CPRG +CPH+HGD C TCGK CLHPFR
Sbjct:    1 MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVR-----------------------AASNLP-LSSDSESLDR------SISTTPSRHLQQQGDNNDGDKSSNVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFR 141          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN1_HUMAN (E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 56/192 (29.17%), Postives = 88/192 (45.83%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNI-CTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELS---ALSR------------------PFLPPNKTAWNPESVCND-----SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K+V C++F HG C +G++C +SHD  D P ++ C Y+Q+G+C YG RCRYEH KP                       ++ + G + E++   A SR                   F+P           C +     S+  +E ++ +      + +C +AA G C  GE C ++HGD+C  CG   LHP
Sbjct:   56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKP-LKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHP 246          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN1_MOUSE (E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 56/192 (29.17%), Postives = 85/192 (44.27%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNI-CTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELS---ALSR------------------PFLPPNKTAWNPESVCND-----SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K+V C++F HG C +G++C +SHD  D P  + C Y+Q+G+C YG RCRYEH KP                       ++   G + E++   A SR                   F+P           C +     S+  +E ++        + +C +AA G C  GE C ++HGD+C  CG   LHP
Sbjct:   56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYFQRGYCVYGDRCRYEHSKP-LKQEEVTATDLSAKPSLAASSSLSSGVGSLAEMNSGEAESRNPSFPTVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEVPPQGSVTKEESEKEPTTVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHP 246          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN2_XENLA (Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis GN=mkrn2 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 58/201 (28.86%), Postives = 83/201 (41.29%), Query Frame = 2
Query:  212 KRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSALSRPFLP-----PNKT-AWNPESVCNDSLEN------------------------------DEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            K+V C++F HG C +G  C FSHD     P+ +C ++ +G C+YG+RCRY+HVKP                       +   P + P   A   P +P       KT       +C  S++                               DE  +P +   A + +C FA AG C  G+ CP++HGD C  CG   LHP
Sbjct:    4 KQVTCRYFLHGVCREGSRCLFSHDLATSKPSTVCRFFLRGQCAYGTRCRYDHVKPCNGTVFIPPQEMSP---------VLSPPPLFPAQEAAVPPTIPAPQRREKKTLVLRDRDLCGASVDPALQPGCITESQGSEGEAKPHSYLEAICTGLDESQDPASYPGAPQQLCPFAQAGECHCGDSCPYLHGDACEICGLQVLHP 195          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN2_MOUSE (Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus GN=Mkrn2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 64/205 (31.22%), Postives = 90/205 (43.90%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXG------ITKV-------PGVMPE---------LSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRS----------------ICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHPF 706
            +K+V C++F HG C +G  C FSHD  +  P+ IC YYQKG+C+YG+RCRY+H KP                              T V       PG   +         L+ L+    PP+K   N    C+D   + E+ +P +   A R+                +C +AAAG C  G+ C ++HGD C  C    LHPF
Sbjct:    3 TKQVTCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDHTKPPAAAGGAVGPAPNPSPSSGLHSPHPSPDIATSVMRTHSNEPGKREKKTLVLRDRNLTGLAEDKTPPSKV--NNPGGCSDPQTSPEM-KPHSYLDAIRTGLDDLEASSSYSNEPQLCPYAAAGECRLGDACVYLHGDMCEICRLQVLHPF 204          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN2_DANRE (Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio GN=mkrn2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 62/204 (30.39%), Postives = 85/204 (41.67%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSA---LSRPFLPPNKTAWNPESVCNDSLENDEVDE-----------PRNLKPADRS------------------------ICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K+V C++F HG C +G  C FSHD     P+ IC YYQ+G C+YG RCRY+H+KP                           PG  P  +    L +P +  +K   +       S E+ E++E           P +   A RS                        IC F AAG C  GE CP++HG+ C  C +  LHP
Sbjct:    3 TKQVTCRYFLHGVCREGSRCLFSHDLTTSKPSTICKYYQRGACAYGDRCRYDHIKPPGRGSGAPADHSNRSSSSAG----ASAPGPGPPANTSKHLKKPLVLRDKALCSDSRPRVFSAESSELNECWEQRDDGAQKPHSYLEAIRSGLDASAAAAATAGTFPELQQTSPQICPFLAAGQCQYGESCPYLHGEMCEICRQHVLHP 202          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN1_SERQU (Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola quinqueradiata GN=mkrn1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 58/178 (32.58%), Postives = 79/178 (44.38%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGFCSYGSRCRYEHVKP------XXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSL-----ENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K V C++F HG C +G++C +SHD  +  P   IC ++QKG C +G RCR+EH KP                            G T VPG    ++A    F+P        E    +S      E D    P N K   + +C +AA G C  G  C ++HGD C  CG   LHP
Sbjct:   19 TKHVTCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGDRCRFEHCKPAKNEELPAPQMLPLPSASLAGPSDPEPSGPTPVPGAQDWVNAAE--FVPGQPYCGRAEQAKVESSVPLIEEFDSYPAPDN-KQLRKQLCPYAAVGECRYGINCAYLHGDVCYMCGLQVLHP 193          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN1_MACEU (E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 53/195 (27.18%), Postives = 83/195 (42.56%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSALSR------------------------PFLPPNKTAWNPESVCNDS-----LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K+V C++F HG C KG +C +SHD     +  +C YYQ+G C+YG RCRYEH KP                        + +P ++  L+ +S                          F+P           C ++     +  +E+++ +      + +C +AA G C  GE C ++HGD C  CG   LHP
Sbjct:   52 TKQVTCRYFMHGVCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYEHTKP----LKREEVTAANLAAKSDLPASSSLPALVEPLAEVSTGEAESVNSNFAAAGAGGEDWVNAIEFVPGQPYCGRAAPSCTEAPLQGMVIEEELEKQQTNVEMKKQLCPYAAVGECRYGENCVYLHGDACDMCGLQVLHP 242          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN1_XENLA (Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis GN=mkrn1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 58/185 (31.35%), Postives = 80/185 (43.24%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSALSRPFLPPNKTAW---------------NPESVCNDSLENDEVDEPRNLKPAD----RSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            ++ V C++F HG C +G +C +SHD     +  IC Y+Q+G C+YG RCRYEH KP                       I        EL+A       P    W                PE+    +++ DE  E    +PAD    + +C +AA G C  GE C ++HGD C  CG   LHP
Sbjct:   35 TRHVTCRYFIHGVCKEGINCRYSHDLATSRSAMICRYFQRGCCAYGDRCRYEHNKPLQEDPTGDTCTAPSESLPEPSGNINSKAA---ELAASELASGGPRAQDWVNAVEFVPGQLYSGRAPEAYTQGTVKPDEGRE----EPADPELKKQLCPYAAMGECRYGENCVYLHGDPCDMCGLQVLHP 212          
The following BLAST results are available for this feature:
BLAST of FC930966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
C3H41_ORYSJ1.049e-4045.95E3 ubiquitin-protein ligase makorin OS=Oryza sativ... [more]
C3H35_ARATH2.583e-3946.20E3 ubiquitin-protein ligase makorin OS=Arabidopsis... [more]
MKRN1_HUMAN4.893e-2229.17E3 ubiquitin-protein ligase makorin-1 OS=Homo sapi... [more]
MKRN1_MOUSE5.410e-2129.17E3 ubiquitin-protein ligase makorin-1 OS=Mus muscu... [more]
MKRN2_XENLA9.228e-2128.86Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN2_MOUSE1.574e-2031.22Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN2_DANRE1.574e-2030.39Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN1_SERQU4.580e-2032.58Probable E3 ubiquitin-protein ligase makorin-1 OS=... [more]
MKRN1_MACEU5.982e-2027.18E3 ubiquitin-protein ligase makorin-1 OS=Macropus ... [more]
MKRN1_XENLA1.740e-1931.35Probable E3 ubiquitin-protein ligase makorin-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34110H12EF PostHarvP1 Citrus clementina cDNA clone C34110H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930966 ID=FC930966; Name=FC930966; organism=Citrus clementina; type=EST; length=709bp
GGAATCAATGATGGAAATTCACGTGCCCCCTTCATTGTCGCTTCAATTTC
TCTCTCCCCATTTTAGCTTTCCATTAAAACAATCAATCAATTGAATGATT
TTAAGTTTCTAGGGTTTCAATTGATTCATCGGAAGCAAATAAAAAGGACT
CGTTTCGAACACTTTAATTTATTTGCGTCTTTCACAAATTCAAGAACGAA
ACGACATGTCCAAGAGGGTCCTTTGCAAGTTCTTTGCTCATGGAGCATGT
CTGAAAGGCGAGCATTGTGAGTTTTCACATGATTGGAAGGATCCACCGAA
TAATATATGCACTTATTATCAGAAAGGGTTCTGCTCTTATGGTAGTCGGT
GCAGATATGAGCATGTCAAACCTTCTCGGTCAGAGTCGGCTGCTTCATCT
TCCTCATCAGTTTCTCATCCTTCAAGAGCTACATCAAGTGGGATAACTAA
AGTTCCAGGTGTCATGCCAGAGCTATCTGCATTGAGTAGACCTTTTCTTC
CTCCTAATAAGACAGCATGGAATCCGGAGTCTGTGTGCAATGATTCTTTA
GAGAATGATGAGGTTGACGAGCCCAGGAATCTAAAACCTGCTGACCGTTC
TATCTGTTCATTTGCTGCTGCTGGTAATTGTCCTCGTGGGGAAAAATGTC
CTCATATTCATGGAGACACATGCCCAACTTGTGGGAAAGCATGCTTGCAT
CCTTTCAGA
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