FC930978

Overview
NameFC930978
Unique NameFC930978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12716 contig Ccv1_Contig12716:127..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ATTY_RAT (Tyrosine aminotransferase OS=Rattus norvegicus GN=Tat PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  135 IRGVLTSLKENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLN-RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTA 695
            IR ++ ++K   N    + VI L  GDP+ F    T      A+ DAL +  YN Y+P+ G  S+R  +A Y +  + P  L  +DV LT GCSQAIE+ L+VLA PG NILIPRPG+ LY   A   +  +E + Y+LLP K WE+DL  +E+L DE T  +V+ NP +PCG+VFS +HLQKI   A
Sbjct:   56 IRAIVDNMKVQPNPN--KTVISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGYLSSREEVASYYHCHEAP--LEAKDVILTSGCSQAIELCLAVLANPGQNILIPRPGFSLYRTLA--ESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVA 237          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ATTY_MOUSE (Tyrosine aminotransferase OS=Mus musculus GN=Tat PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.036e-35
Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  135 IRGVLTSLKENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLN-RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTA 695
            IR ++ ++K   N    + VI L  GDP+ F    T      A+ DAL +  YN Y+P+ G  S+R  +A Y +  + P  L  +DV LT GCSQAIE+ L+VLA PG NILIPRPG+ LY   A   +  +E + Y+LLP K WE+DL  +E+L DE T  +V+ NP +PCG+VFS +HLQKI   A
Sbjct:   56 IRAIVDNMKVKPNPN--KTVISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGYLSSREEVASYYHCPEAP--LEAKDVILTSGCSQAIELCLAVLANPGQNILIPRPGFSLYRTLA--ESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVA 237          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ATTY_HUMAN (Tyrosine aminotransferase OS=Homo sapiens GN=TAT PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.145e-34
Identity = 82/188 (43.62%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  135 IRGVLTSLKENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLN-RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTA 695
            IR ++ ++K   N    + +I L  GDP+ F    T      A+ DAL +  YN Y+P+ G  S+R  IA Y +  + P  L  +DV LT GCSQAI++ L+VLA PG NIL+PRPG+ LY+  A   +  +E + Y+LLP K WE+DL  +E L DE T  +++ NP +PCG+VFS +HLQKI   A
Sbjct:   56 IRAIVDNMKVKPNPN--KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAP--LEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLA--ESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVA 237          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ATTY_BOVIN (Tyrosine aminotransferase OS=Bos taurus GN=TAT PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.954e-34
Identity = 82/188 (43.62%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  135 IRGVLTSLKENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLN-RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTA 695
            IR ++ ++K   N    + +I L  GDP+ F    T      A+ DAL +  +N Y P+ G  S+R  +A Y +  + P  L  +DV LT GCSQAIE+ L+VLA PG NIL+PRPG+ LY   A   +  +E + Y+LLP K WE+DL  +E+L DE TV +++ NP +PCG+VFS +HLQKI   A
Sbjct:   49 IRAIVDNMKVKPNPN--KTMIALSIGDPTVFGNLPTDPEVTQAMKDALDSGKFNGYVPSIGYLSSREEVASYYHCPEAP--LEAKDVILTSGCSQAIELCLAVLANPGQNILVPRPGFSLYRTLA--ESMGIEVKLYNLLPEKNWEIDLKQLESLIDEKTVCLIVNNPSNPCGSVFSRRHLQKILAVA 230          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ATTY_DICDI (Tyrosine aminotransferase OS=Dictyostelium discoideum GN=tat PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 63/180 (35.00%), Postives = 99/180 (55.00%), Query Frame = 3
Query:  159 KENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTAR 698
            K        +  I L  GDP  F        A D +++ ++++ +N Y P+ G   AR  +A Y+      KL+ +D+ +  G S AIE+++ VL   G NIL+P+PG+PLYE         +  +HY+LL  + + VDL+ + +L D+ T AI++ NP +PCG V+S QHL  I + AR
Sbjct:   31 KGGFKPNPNKSTISLSIGDPCVFGNLNILDYANDLLIENIKSSKFNGYPPSTGYEIAREAVAKYVETPTS-KLTSKDIIVASGASGAIELAIGVLLNEGDNILVPKPGFPLYE--CTSKTKFINVKHYNLLEKQGFNVDLEHLRSLIDDKTKAILVNNPSNPCGIVYSKQHLLDIIQVAR 207          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ATTY_TRYCR (Tyrosine aminotransferase OS=Trypanosoma cruzi PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 54/179 (30.17%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  186 RPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYK------LSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTARNL 704
            +P+I L  GDP+      TS      + +A+ +   N Y PT G P AR  +A +      +K      +  ++V L  G S  I ++++ +   G   L+P+PG+P YE         +    Y+  P   WE DLD +  L D+ T  +++ NP +PCG+ FS +H++ I R A  L
Sbjct:   33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMH--FYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL 209          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 50/181 (27.62%), Postives = 87/181 (48.07%), Query Frame = 3
Query:  201 LGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS-VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADE------NTVAIVIINPGDPCGNVFSYQHLQKIARTARNLGDIVIA 722
            L H +   F     + V + + +    +     YS + G+P  RR +AD++     +   P D+YLT G S A  + ++ ++ARP   +++P P YPLY       + ++ +  Y L     W++D D  +   DE      N    V+INPG+P G   S   ++K+ R A+  G +++A
Sbjct:  103 LDHAEEKWFQNLFPTDVVQRSKMLLKESGSLGAYSASQGIPLVRRHVADFIRARDGFDCEPSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQIDLMSGSMVS--YSLSEENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEKVLRFAKAKGIVLLA 281          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: YFBQ_SHIFL (Uncharacterized aminotransferase yfbQ OS=Shigella flexneri GN=yfbQ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 65/205 (31.71%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  108 NKTTSSAVTIRGVLTSLKENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTARNLGDIVIA 722
            +K  +    IRG +    + L E+  + V+ L  G+P+ F       +  D V+  L TA   C S   G+ SAR+ I  +        ++ ED+Y+  G S+ I  ++  L   G  +L+P P YPL+   AA S ++ +A HY       W  DLD + A     T  IVIINP +P G V+S + L +I   AR    I+ A
Sbjct:    8 SKLENVCYDIRGPVLKEAKRLEEEGNK-VLKLNIGNPAPFGFDAPDEILVD-VIRNLPTAQGYCDSK--GLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWT--AAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFA 206          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOLI (Uncharacterized aminotransferase yfbQ OS=Escherichia coli (strain K12) GN=yfbQ PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 65/205 (31.71%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  108 NKTTSSAVTIRGVLTSLKENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTARNLGDIVIA 722
            +K  +    IRG +    + L E+  + V+ L  G+P+ F       +  D V+  L TA   C S   G+ SAR+ I  +        ++ ED+Y+  G S+ I  ++  L   G  +L+P P YPL+   AA S ++ +A HY       W  DLD + A     T  IVIINP +P G V+S + L +I   AR    I+ A
Sbjct:    8 SKLENVCYDIRGPVLKEAKRLEEEGNK-VLKLNIGNPAPFGFDAPDEILVD-VIRNLPTAQGYCDSK--GLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWT--AAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFA 206          
BLAST of FC930978 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOL6 (Uncharacterized aminotransferase yfbQ OS=Escherichia coli O6 GN=yfbQ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 65/205 (31.71%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  108 NKTTSSAVTIRGVLTSLKENLNEKDKRPVIHLGHGDPSAFPCFRTSTVAEDAVVDALRTAHYNCYSPTFGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPGKCWEVDLDGVEALADENTVAIVIINPGDPCGNVFSYQHLQKIARTARNLGDIVIA 722
            +K  +    IRG +    + L E+  + V+ L  G+P+ F       +  D V+  L TA   C S   G+ SAR+ I  +        ++ ED+Y+  G S+ I  ++  L   G  +L+P P YPL+   AA S ++ +A HY       W  DLD + A     T  IVIINP +P G V+S + L +I   AR    I+ A
Sbjct:    8 SKLENVCYDIRGPVLKEAKRLEEEGNK-VLKLNIGNPAPFGFDAPDEILVD-VIRNLPTAQGYCDSK--GLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWT--AAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFA 206          
The following BLAST results are available for this feature:
BLAST of FC930978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ATTY_RAT6.074e-3645.21Tyrosine aminotransferase OS=Rattus norvegicus GN=... [more]
ATTY_MOUSE1.036e-3545.21Tyrosine aminotransferase OS=Mus musculus GN=Tat P... [more]
ATTY_HUMAN1.145e-3443.62Tyrosine aminotransferase OS=Homo sapiens GN=TAT P... [more]
ATTY_BOVIN1.954e-3443.62Tyrosine aminotransferase OS=Bos taurus GN=TAT PE=... [more]
ATTY_DICDI1.499e-2635.00Tyrosine aminotransferase OS=Dictyostelium discoid... [more]
ATTY_TRYCR2.319e-1930.17Tyrosine aminotransferase OS=Trypanosoma cruzi PE=... [more]
ALAT_SCHPO9.118e-1627.62Putative alanine aminotransferase OS=Schizosacchar... [more]
YFBQ_SHIFL4.525e-1531.71Uncharacterized aminotransferase yfbQ OS=Shigella ... [more]
YFBQ_ECOLI4.525e-1531.71Uncharacterized aminotransferase yfbQ OS=Escherich... [more]
YFBQ_ECOL64.525e-1531.71Uncharacterized aminotransferase yfbQ OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC34100B01EF PostHarvP1 Citrus clementina cDNA clone C34100B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930978 ID=FC930978; Name=FC930978; organism=Citrus clementina; type=EST; length=723bp
GGCTTCTTGGCTCATGCCGCTCAAAAATCATGGAAAACGAGTCTCTCCTT
CATCAGAAATTGAGTCTTTTTGGTGTTAACCCGAAAAAAGAGGAGCGCCA
CAACGACAACAAGACCACTTCTTCAGCCGTTACCATTCGAGGAGTCCTCA
CTTCCTTAAAAGAGAATCTGAACGAAAAGGACAAGAGACCCGTCATTCAC
CTTGGCCACGGCGACCCCTCGGCGTTTCCTTGCTTTCGGACAAGCACCGT
AGCCGAAGATGCCGTCGTCGATGCTCTCCGGACTGCCCACTACAACTGCT
ATTCGCCCACCTTTGGTGTTCCTTCTGCTAGAAGGGGCATAGCTGATTAT
CTGAACCGTGACCTCCCATACAAGTTATCACCGGAAGATGTTTATCTCAC
ACTTGGATGTAGCCAAGCAATCGAAATATCATTATCGGTCCTCGCTCGTC
CTGGTGCCAATATTTTGATTCCAAGGCCCGGCTACCCTTTATATGAAATT
CATGCAGCAGGGAGTAACAACAACCTTGAAGCTCGCCATTATGATCTTCT
TCCTGGAAAGTGTTGGGAAGTGGATCTTGATGGAGTTGAAGCCCTTGCAG
ATGAGAATACAGTTGCCATTGTCATCATAAACCCTGGCGATCCATGCGGA
AATGTCTTCAGTTACCAACATCTGCAGAAAATTGCGCGGACAGCAAGAAA
TCTTGGGGATATTGTGATTGCTG
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