FC931051

Overview
NameFC931051
Unique NameFC931051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length332
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14883 contig Ccv1_Contig14883:259..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.693e-33
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    5 ALKEEHIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIEXXXXXXXXXXXXKRVL 262
            AL ++HIIG LDG SVQQAL+EN+LY+LD+HDI+LPFLDRINALDGRKAYATRTIFFL  LG LKP+AIE            KRVL
Sbjct:  461 ALTDDHIIGHLDGFSVQQALEENRLYMLDYHDIFLPFLDRINALDGRKAYATRTIFFLTRLGTLKPVAIELSLPPHGPKHRSKRVL 546          

HSP 2 Score: 41.5874 bits (96), Expect = 3.693e-33
Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = 3
Query:  276 DATSNWLWQIAKAHVCSND 332
            DATSNW+WQ+AKAHV SND
Sbjct:  551 DATSNWMWQLAKAHVSSND 569          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.940e-31
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 2
Query:    5 ALKEEHIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIE 214
            AL E+HIIGQLDG++VQQAL+ N+L+++D+HDIYLPFLDRINALDGRKAYATRTI FL  LG LKPIAIE
Sbjct:  467 ALTEDHIIGQLDGLTVQQALETNRLFMVDYHDIYLPFLDRINALDGRKAYATRTILFLTRLGTLKPIAIE 536          

HSP 2 Score: 40.817 bits (94), Expect = 1.940e-31
Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = 3
Query:  276 DATSNWLWQIAKAHVCSND 332
            DATSNW+WQ+AKAHV SND
Sbjct:  558 DATSNWMWQLAKAHVGSND 576          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.461e-31
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 2
Query:    5 ALKEEHIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIE 214
            A+ EEHIIG LDGMSVQ+A++ ++LY+LD+HDI+LPFLDRINA DGRKAY TR +FFL + G LKPIAIE
Sbjct:  441 AITEEHIIGHLDGMSVQEAVEGSRLYMLDYHDIFLPFLDRINAQDGRKAYGTRAVFFLTAAGTLKPIAIE 510          

HSP 2 Score: 46.2098 bits (108), Expect = 9.461e-31
Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 3
Query:  276 DATSNWLWQIAKAHVCSND 332
            DATSNWLWQ+AKAHVCSND
Sbjct:  532 DATSNWLWQLAKAHVCSND 550          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.397e-29
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    5 ALKEEHIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIE 214
            ++ E HI G L+G++VQQA+DE KL+++D+HD YLPFLDRINA+DGRKAYATRTIFFL   G LKPIAIE
Sbjct:  455 SITETHIAGHLNGLTVQQAMDEAKLFIVDYHDAYLPFLDRINAIDGRKAYATRTIFFLTEAGTLKPIAIE 524          

HSP 2 Score: 40.817 bits (94), Expect = 8.397e-29
Identity = 19/30 (63.33%), Postives = 20/30 (66.67%), Query Frame = 3
Query:  243 PDQSACSTCCRDATSNWLWQIAKAHVCSND 332
            P  S   T   DATSNWLW +AKAHV SND
Sbjct:  535 PRPSKVLTPPYDATSNWLWMLAKAHVSSND 564          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.678e-18
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   20 HIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIE 214
            HI   L+G+SVQQALD N+LY+LDHHD ++PFL  IN+LDG   YATRT+ FL     LKP+AIE
Sbjct:  404 HIEKNLEGLSVQQALDSNRLYILDHHDHFMPFLIDINSLDGIFTYATRTLLFLRDDDTLKPLAIE 468          

HSP 2 Score: 28.4906 bits (62), Expect = 4.678e-18
Identity = 11/28 (39.29%), Postives = 16/28 (57.14%), Query Frame = 3
Query:  249 QSACSTCCRDATSNWLWQIAKAHVCSND 332
            +S   T       +W+WQ+AKA+V  ND
Sbjct:  482 KSKVHTPASSGIESWVWQLAKAYVAVND 509          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.907e-18
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   20 HIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIE 214
            HI   L+G++VQQALD N+LY+LDHHD ++PFL  +N L+G   YATRT+FFL   G L P+AIE
Sbjct:  407 HIGSNLEGLTVQQALDSNRLYILDHHDRFMPFLIDVNGLEGNFIYATRTLFFLRGDGTLAPLAIE 471          

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-18
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  291 WLWQIAKAHVCSND 332
            W+WQ+AKA+V  ND
Sbjct:  499 WVWQLAKAYVAVND 512          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.027e-17
Identity = 34/73 (46.58%), Postives = 56/73 (76.71%), Query Frame = 2
Query:    8 LKEEHIIGQLD--GMSVQQALDENKLYVLDHHDIYLPFLDRINAL--DGRKAYATRTIFFLNSLGPLKPIAIE 214
            L EE I  +++  G ++++AL+E +L+++D+HDI LPF+++IN++  D RK YA+RTIFF +  G L+P+AIE
Sbjct:  456 LTEEIIAREVEHYGTTIEKALEEKRLFLVDYHDILLPFVEKINSIKEDPRKTYASRTIFFYSKNGALRPLAIE 528          

HSP 2 Score: 40.817 bits (94), Expect = 1.027e-17
Identity = 14/19 (73.68%), Postives = 19/19 (100.00%), Query Frame = 3
Query:  276 DATSNWLWQIAKAHVCSND 332
            DAT++W+W++AKAHVCSND
Sbjct:  548 DATTHWIWKLAKAHVCSND 566          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.448e-17
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 2
Query:   17 EHIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIE 214
            EHI   L+G++VQQAL+ N+LY+LDHHD ++PFL  +N L G   YATRT+FFL   G L P+AIE
Sbjct:  401 EHIEKNLEGLTVQQALESNRLYILDHHDRFMPFLIDVNNLPGNFIYATRTLFFLRGDGRLTPLAIE 466          

HSP 2 Score: 26.5646 bits (57), Expect = 6.448e-17
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  279 ATSNWLWQIAKAHVCSND 332
            +   W+W++AKA+V  ND
Sbjct:  491 SVEGWVWELAKAYVAVND 508          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.728e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    8 LKEEHIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIE 214
            + E HI   ++G++VQ AL  N+L++LDHHD ++PFLD+IN LDG   YA+RTI  L   G LKP+AIE
Sbjct:  410 ITEAHIKHNMEGLTVQNALKGNRLFILDHHDHFMPFLDKINKLDGNFIYASRTILLLKDDGTLKPLAIE 478          
BLAST of FC931051 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.850e-15
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 2
Query:    5 ALKEEHIIGQLDGMSVQQALDENKLYVLDHHDIYLPFLDRINALDGRKAYATRTIFFLNSLGPLKPIAIE 214
            +++ EHI   ++G++VQ+AL++NKLY+LDHHD  +P+L RIN+ +  K YATRT+  L + G LKP+AIE
Sbjct:  424 SIRTEHIESNMNGLNVQEALEQNKLYILDHHDALMPYLTRINSTN-TKTYATRTLLLLQADGTLKPLAIE 492          
The following BLAST results are available for this feature:
BLAST of FC931051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX3_ARATH3.693e-3369.77Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH1.940e-3178.57Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ9.461e-3171.43Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ8.397e-2970.00Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX1_ORYSJ4.678e-1861.54Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX3_ORYSJ7.907e-1858.46Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX6_ARATH1.027e-1746.58Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX1_HORVU6.448e-1757.58Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX4_ORYSJ1.728e-1553.62Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX5_ARATH3.850e-1551.43Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC34100H05EF PostHarvP1 Citrus clementina cDNA clone C34100H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931051 ID=FC931051; Name=FC931051; organism=Citrus clementina; type=EST; length=332bp
CCGGGCATTGAAAGAAGAACACATCATCGGCCAACTCGATGGCATGTCCG
TACAACAGGCCTTGGACGAGAATAAATTGTACGTGTTGGATCACCATGAC
ATTTACCTTCCATTTCTAGACAGAATAAATGCACTTGATGGTAGAAAAGC
ATATGCAACTCGTACAATATTTTTCTTGAATTCTCTTGGACCTCTTAAGC
CCATTGCCATCGAGCTCAGCCTCCCACCGTCCGGACCGAGCTCCCGATCA
AAGCGCGTGCTCCACCTGCTGCCGAGACGCCACTTCCAATTGGCTTTGGC
AGATTGCCAAGGCCCATGTCTGCTCCAACGAT
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